“…TXSScan also used HMMER3 [64] to identify flagellin, type-IV pili, tight adherence (Tad), T1SS, T2SS, T3SS, T4SS (types B, C, F, G, I and T), pT4SSi, pT4SSt, T5SS (a, b and c type), T6SS (types i, ii and iii), and T9SS genes. virB6 (polytopic inner membrane essential for substrate secretion) [146][147][148] of the T4SS type-T was the only gene identified in all representative strains of the five R. toxicus populations, except RT-IV strain CS36, and the R. tritici strain NCPPB 1953 genome. TXSScan identified 3070, 2999, 3001, 3048 and 1806 virB6 domains within the genomes of SA03-04 (RT-I), WAC7056 (RT-II), WA40-23C (RT-III), CS39 (RT-V) and R. tritici strain NCPPB 1953, respectively.…”