Two transition proteins, TP1 and TP2, participate in the repackaging of the spermatid genome early in mammalian spermiogenesis, coincident with the first detectable changes in chromatin condensation. Using an optical trap and a two-channel flow cell to move single DNA molecules into buffer containing protein, we have measured the rates of DNA condensation and decondensation induced by the binding of Syrian hamster transition proteins TP1 and TP2 and protamines P1 and P2. The results show that both transition proteins condense free DNA, with rates similar to those of protamine 1 and 2. DNA molecules condensed with TP1 were significantly less stable than DNA condensed by protamine or by TP2. Experiments conducted with a peptide corresponding to the C-terminal 25 residues of TP2 showed that this domain is responsible for condensing DNA. Experiments conducted with two fragments of TP1 containing arginine and lysine residues demonstrated that DNA binding by TP1 must involve more than these basic sequences. Zinc facilitated the condensation of DNA by P2 but not by TP2. The dissociation rates of TP2 and P2 from DNA were not affected by the addition of zinc.The structure of chromatin is changed dramatically during the final stages of spermiogenesis in mammals as the spermatid's genome is condensed and inactivated by the sequential binding of several basic nuclear proteins (1). Although the most dramatic change in condensation occurs in late-step spermatids (2) when the protamines displace transition proteins TP1 and TP2 (3) and coil the DNA into toroidal subunits (4), the replacement of histones by these two transition proteins several days earlier coincides with the first appearance of a detectable change in the condensation state of chromatin (5, 6). Studies in the rat have demonstrated that the deposition of the two transition proteins in spermatid chromatin occurs sequentially, with TP2 appearing first in step 10 spermatids. TP1 was observed to appear ϳ24 h later in step 12 spermatids (7).Previous experiments have shown that TP2 binds preferentially to CG sequences, and the observation that TP2 appears early in spermatid chromatin (8) suggested that the function of TP2 may be to shut down transcription by binding to the CG islands that are associated with gene promoter domains. TP1, which appears a day later, has been reported to stimulate DNA repair of single-stranded breaks (9) and is suggested to function by binding to the breaks induced during the removal of the histones until they can be repaired (9, 10). Following the removal of the histones and the repair or ligation of the singlestranded breaks, protamines are synthesized and deposited on chromatin to complete the compaction of the chromatin and ensure the sperm genome remains inactive until it can be deposited inside an egg and reactivated.Protamines, on the other hand, are highly charged, argininerich proteins that bind to DNA in a nonspecific manner. Previous in vivo and in vitro studies have been carried out to determine how DNA is condensed by protamine...