ABSTRACTTranscripts ofLeptospira16S rRNA, FlaB, LigB, LipL21, LipL32, LipL36, LipL41, and OmpL37 were quantified in the blood of susceptible (hamsters) and resistant (mice) animal models of leptospirosis. We first validated adequate reference genes and then evaluated expression patternsin vivocompared toin vitrocultures. LipL32 expression was downregulatedin vivoand differentially regulated in resistant and susceptible animals. FlaB expression was also repressed in mice but not in hamsters. In contrast, LigB and OmpL37 were upregulatedin vivo. Thus, we demonstrated that a virulent strain ofLeptospiradifferentially adapts its gene expression in the blood of infected animals.