The construction of fullerene (C60) hierarchical nanostructures with the help of amphiphilic molecules remains a challenging task in nanoscience and nanotechnology. Utilizing the host–guest complex concept, sub‐10 nm layered superstructures are constructed from a monofunctionalized C60 dendron (C60D, guest) and tweezer‐like pyrene dendron (PD, host). Since C60D and PD are asymmetric shape amphiphiles having liquid crystal (LC) dendrons, both C60D and PD construct head‐to‐head bilayer superstructures by themselves. From fluorescence titration experiments, it is realized that the host–guest complex shows 1:1 stoichiometric binding with a binding constant (Ksv = 2.45 × 105m−1). Based on the morphological observations and scattering analyses, it is found that buckle‐like asymmetric building blocks (C60D·PD) are self‐assembled by the host–guest complex and construct multilayer hybrid nanostructures. The hierarchical hybrid nanostructures consist of the self‐assembled C60D·PD bilayer with a 2D C60·P nanoarray sandwiched between LC dendrons. This advanced strategy is expected to be a practicable and rational guideline for the fabrication of programmed hierarchical hybrid nanostructures.