“…In particular, microRNAs have drawn much attention as new candidate molecules for transcriptional analyses. Transcriptome has been analyzed commonly using two methods, DNA-microarray and Next-generation sequencing (NGS), which are the most recently developed techniques for analyzing gene expression levels [ 35 , 36 ]. Due to high-throughput data generation, transcriptomics has been applied to evaluate the nanotoxicity in cells treated with NPs, such as CuO NPs, nano-Ag (nAg), nano-TiO 2 (nTiO 2 ), nano-ZnO (nZnO), CdTe/CdS, quantum dots (QDs), and silica-coated magnetic nanoparticles containing rhodamine B isothiocyanate dye [MNPs@SiO 2 (RITC)] [ 21 , 35 , 37 , 38 , 39 , 40 ].…”