Majorana bound states (MBSs) can occur in topological Josephson junction (JJ) arrays with the presence of a fractional vortex with 2π-phase winding. It has been theoretically shown that the braiding operation can be achieved by using current pulses, compatible with single flux quantum (SFQ) technology. Therefore, we designed an SFQ logic circuit for the braiding operations of the topological JJ array using single flux quanta in a conventional JJ array. Braiding operations could be realized by an SFQ logic circuit with double flux quantum driver. To obtain positive and negative current pulses using the SFQ logic circuit, we used SFQ logic circuits with ac biasing for simulation. Finally, we confirmed the CNOT operation using an array-type SFQ circuit by means of simulation and estimated the CNOT operation speed.