Managing Scientific Literature with Software from the PORTAL-DOORS Project

Dutta, Shiladitya; Kowshik, Pooja; Ambati, Adarsh; Nori, Sathvik; Taswell, S. Koby; Taswell, Carl

doi:10.1109/escience.2019.00081

Cited by 4 publications

(2 citation statements)

References 13 publications

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“…The PDP-DREAM Ontology provides a formal ontology that includes classes and properties useful for creating semantic markup to be embedded in a DOORS or Nexus record (Craig and Taswell 2021). The DREAM part of the name refers to the DREAM Principles that guide the PORTAL-DOORS project (Dutta et al 2019).…”

Section: Introductionmentioning

confidence: 99%

Managing Bibliometrics with Contributor Roles and Literature Provenance for NPDS Metadata Records

Craig¹,

Taswell²

2023

Brainiacs

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Tracking the provenance of information and knowledge with sources, concepts, ideas and the contributions of creators, inventors, and scholars remains essential to the reproducibility of scientific results, the reliability of engineering methods, the integrity of clinical trials, and the fair allocation of research and development resources. Since the first version, the PORTAL-DOORS Project (PDP) has provided schemas for the Nexus-PORTAL-DOORS-Scribe (NPDS) cyberinfrastructure which have always supported inclusion of provenance data as part of the metadata describing the entity corresponding to an NPDS record. However, PDP has not yet provided alternative templated formats for the provenance infosubset (aka, provenance facet) of the entire infoset that documents the entity for the identified NPDS record. Therefore, this report introduces a template for the provenance facet suitable for a generic entity type, along with alternatives appropriate for various specific entity types, including a template for authored publications that enables descriptions of contributor roles compatible with the CRediT taxonomy. By extending the PDP-DREAM ontology and creating a provenance subontology for the NPDS cyberinfrastructure with semantic classes and properties for these contributor roles, semantic search in NPDS repositories can be facilitated to support more effective discovery of resources with consideration of entities as same, similar, related, or different.

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Section: Introductionmentioning

confidence: 99%

Managing Bibliometrics with Contributor Roles and Literature Provenance for NPDS Metadata Records

Craig¹,

Taswell²

2023

Brainiacs

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“…We continue our work on PDP here in this present contribution with the following three objectives: Aim 1) Promote creative authenticity, fair citation, and adherence to integrity and ethics in scholarly research publishing, that is, a continuation of the research agenda mapped in our recent papers on the DREAM principles and FAIR metrics (Craig, Ambati, Dutta, Kowshik, et al, 2019a; Craig, Ambati, Dutta, Mehrotra, et al, 2019b; Dutta, Kowshik, Ambati, Nori, et al, 2019; Dutta, Uhegbu, Nori, Mashkoor, et al, 2020), now with the introduction and discussion of new terms for onpaper versus offpaper behavior in analogy with online versus offline behavior, and further expounded with detailed definitions and descriptions for both idea‐laundering plagiarism by authors and idea‐bleaching censorship by editors . Aim 2) Formalize an abstract model (expressed in ordinary English) to guide and organize a software application driven workflow process for author submission, peer review, and editorial review in scholarly research publishing for online open access web‐based journals.…”

Section: Introductionmentioning

confidence: 99%

The hitchhiker's guide to scholarly research integrity

Taswell

Triggle

Vayo

et al. 2020

Proc Assoc Inf Sci Technol

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The pursuit of truth in research should be both an ideal in aspiration and also a reality in practice. The PORTAL‐DOORS Project (PDP) strives to promote creative authenticity, fair citation, and adherence to integrity and ethics in scholarly research publishing using the FAIR family of quantitative metrics with acronym FAIR for the phrases Fair Attribution to Indexed Reports and Fair Acknowledgment of Information Records, and the DREAM principles with acronym DREAM for the phrase Discoverable Data with Reproducible Results for Equivalent Entities with Accessible Attributes and Manageable Metadata. This report presents formalized definitions for idea‐laundering plagiarism by authors, idea‐bleaching censorship by editors, and proposed assertion claims for authors, reviewers, editors, and publishers in ethical peer‐reviewed publishing to support integrity in research. All of these principles have been implemented in version 2 of the PDP‐DREAM ontology written in OWL 2. This PDP‐DREAM ontology will serve as the model foundation for development of a software‐guided workflow process intended to manage the ethical peer‐reviewed publishing of web‐enabled open access journals operated online with PDP software.

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An Information‐Resilient Big‐Data Workbench with PDP‐DREAM Software

Anand

Taswell²

2022

Proceedings of the Association for Information Science and Tech

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PORTAL-DOORS Project DREAM Software, available as an open-source C#-centric codebase from a Github public repository at PDP-DREAM, implements the PDP-DREAM principles and PDP-FAIR metrics with webenabled workbench software for distributed data repositories in the Nexus-PORTAL-DOORS-Scribe Cyberinfrastructure. PDP-DREAM Software has been developed for Microsoft platform technologies with ASP.NET Core, SQL Server, and Internet Information Server. As a web-enabled workbench, PDP-DREAM provides many features for big data management with tools and services to support information resilience in defense of truth in science and integrity in research.

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Managing Scientific Literature with Software from the PORTAL-DOORS Project

Cited by 4 publications

References 13 publications

Managing Bibliometrics with Contributor Roles and Literature Provenance for NPDS Metadata Records

Managing Bibliometrics with Contributor Roles and Literature Provenance for NPDS Metadata Records

The hitchhiker's guide to scholarly research integrity

An Information‐Resilient Big‐Data Workbench with PDP‐DREAM Software

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