2023
DOI: 10.3389/fmicb.2023.1056790
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Molecular analysis of clinical Citrobacter spp. isolates: Acquisition of the Yersinia high-pathogenicity island mediated by ICEkp in C. freundii

Abstract: BackgroundStudies on Citrobacter spp. are limited, hindering our understanding of its species evolution and medical relevance.MethodsA total of 164 clinical Citrobacter spp. isolates were collected from 2017 to 2020 and identified by VITEK MALDI-TOF MS or VITEK-2 Gram-Negative Identification Card. All isolates were further analyzed by whole-genome sequencing using a HiSeq sequencer. All sequences were processed using different modules of the PGCGAP integrated package: Prokka and fastANI were used for annotatio… Show more

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Cited by 3 publications
(2 citation statements)
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“…These studies and our data indicate that the underlying molecular epidemiology and OXA-48 plasmid architecture differs between C. freundii and C. portucalensis. However, C. portucalensis is commonly misidentified as C. freundii by Matrix-assisted laser desorption/ionization (MALDI-TOF) mass spectrometry and is likely underreported for this reason [33]. In one C. portucalensis isolate, we identified a chromosomal copy of bla OXA-48 in addition to an IncL-localised copy.…”
Section: Discussionmentioning
confidence: 93%
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“…These studies and our data indicate that the underlying molecular epidemiology and OXA-48 plasmid architecture differs between C. freundii and C. portucalensis. However, C. portucalensis is commonly misidentified as C. freundii by Matrix-assisted laser desorption/ionization (MALDI-TOF) mass spectrometry and is likely underreported for this reason [33]. In one C. portucalensis isolate, we identified a chromosomal copy of bla OXA-48 in addition to an IncL-localised copy.…”
Section: Discussionmentioning
confidence: 93%
“…Given the increase of Citrobacter spp. involved in the carbapenemase dissemination with distinct epidemiological pattern, future surveys should include methods that can distinguish C. portucalensis [32,33].…”
Section: Discussionmentioning
confidence: 99%