The rapid development of nanomaterials has provided a good theoretical basis and technical support to solve the problems of food safety inspection. The combination of functionalized composite nanomaterials and well-known detection methods is gradually applied to detect hazardous substances, such as chemical residues and toxins, in agricultural food products. This review concentrates on the latest agro-food safety inspection techniques and methodologies constructed with the assistance of new hybrid micro/nanoentities, such as molecular imprinting polymers integrated with quantum dots (MIPs@QDs), molecular imprinting polymers integrated with upconversion luminescent nanoparticles (MIPs@UCNPs), upconversion luminescent nanoparticles combined with metal−organic frameworks (UCNPs@MOFs), magnetic metal−organic frameworks (MOFs@Fe 3 O 4 ), magnetic covalent−organic frameworks (Fe 3 O 4 @COFs), covalent−organic frameworks doped with quantum dots (COFs@QDs), nanobodyinvolved immunoassay for fast inspection, etc. The presented summary and discussion favor a relevant outlook for further integrating various disciplines, like material science, nanotechnology, and analytical methodology, for addressing new challenges that emerge in agro-food research fields.