“…For positive staining, a cutoff value of 30% was used. 9 For the FISH probes, DNA was isolated from bacterial artificial chromosome clones: RP11-718B1, RP11-179O12, and RP11-24F1 proximal and RP11-791J2, RP11-10K11, and RP11-204624 distal of the TP63 gene, purchased from the BACPAC resources center, Children's Hospital Oakland Research Institute, California, and based on the probe design as used by Vasmatzis et al 10 The isolated DNA was labeled using nick translation either with digoxigenin-or biotin-coupled dideoxynucleotides as haptens. FFPE whole-tissue sections were deparaffinized in xylene, pretreated in 10 mM citric acid buffer, digested in 0.4% pepsin in 0.02M HCL, and codenatured and hybridized with the designed probes.…”