Next Generation Sequencing and Experimental Myology

Gonorazky, Hernan; Naumenko, Sergey; Kao, Der‐Shyang; Mashouri, Pouria; Mathews, Kaylee L.; Tarnopolsky, Mark A.; Moore, Sally; Brudno, Michael; Dowling, J. H.

doi:10.1016/j.nmd.2018.06.426

Cited by 1 publication

(1 citation statement)

References 0 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…The relevance of blood as a proxy for studying disease patterns of gene expression can vary depending on the target tissues and the pathology. For example, in neuromuscular disorders, blood was not found to be representative of myotubes expression (42).…”

Section: Discussionmentioning

confidence: 99%

A rare genomic duplication in 2p14 underlies autosomal dominant hearing loss DFNA58

Lezirovitz

Vieira-Silva

Batissoco

et al. 2020

Human Molecular Genetics

View full text Add to dashboard Cite

Here we define a ~200 Kb genomic duplication in 2p14 as the genetic signature that segregates with postlingual progressive sensorineural autosomal dominant hearing loss (HL) in 20 affected individuals from the DFNA58 family, first reported in 2009. The duplication includes two entire genes, PLEK and CNRIP1, and the first exon of PPP3R1 (protein coding), in addition to four uncharacterized long non-coding (lnc) RNA genes and part of a novel protein-coding gene. Quantitative analysis of mRNA expression in blood samples revealed selective overexpression of CNRIP1 and of two lncRNA genes (LOC107985892 and LOC102724389) in all affected members tested, but not in unaffected ones. Qualitative analysis of mRNA expression identified also fusion transcripts involving parts of PPP3R1, CNRIP1 and an intergenic region between PLEK and CNRIP1, in the blood of all carriers of the duplication, but were heterogeneous in nature. By in situ hybridization and immunofluorescence, we showed that Cnrip1, Plek and Ppp3r1 genes are all expressed in the adult mouse cochlea including the spiral ganglion neurons, suggesting changes in expression levels of these genes in the hearing organ could underlie the DFNA58 form of deafness. Our study highlights the value of studying rare genomic events leading to HL, such as copy number variations. Further studies will be required to determine which of these genes, either coding proteins or non-coding RNAs, is or are responsible for DFNA58 HL.

show abstract

Section: Discussionmentioning

confidence: 99%