Many flagellar proteins are exported by a flagellum-specific export pathway. In an initial attempt to characterize the apparatus responsible for the process, we designed a simple assay to screen for mutants with export defects. Temperature-sensitive flagellar mutants of Salmonella typhimurium were grown at the permissive temperature (30°C), shifted to the restrictive temperature (42°C), and inspected in a light microscope. With the exception of switch mutants, they were fully motile. Next, cells grown at the permissive temperature had their flagellar filaments removed by shearing before the cells were shifted to the restrictive temperature. Most mutants were able to regrow filaments. However, flhA,fliH, fliI, and fiN mutants showed no or greatly reduced regrowth, suggesting that the corresponding gene products are involved in the process of flagellum-specific export. We describe here the sequences offliH,fliI, and the adjacent gene,flij; they encode proteins with deduced molecular masses of 25,782, 49,208, and 17,302 Da, respectively. The deduced sequence of Fliu shows significant similarity to the catalytic 0i subunit of the bacterial FOF, ATPase and to the catalytic subunits of vacuolar and archaebacterial ATPases; except for limited similarity in the motifs that constitute the nucleotide-binding or catalytic site, it appears unrelated to the ElE2 class of ATPases, to other proteins that mediate protein export, or to a variety of other ATP-utilizing enzymes. We hypothesize that FliI is either the catalytic subunit of a protein translocase for flagellum-specific export or a proton translocase involved in local circuits at the flagellum.The bacterial flagellum is a complex structure comprising intracellular, envelope-spanning, and extracellular components. In Salmonella typhimurium, it is encoded by about 40 genes (39).Of those flagellar proteins located within the cell envelope or outside the cell, only the outer-ring (P and L) proteins appear to be exported by the primary signal peptide-dependent pathway (33,36,42). The rest (four rod proteins, a hook protein, three hook-associated proteins, and the filament protein, flagellin) are thought to be exported by a unique, flagellum-specific pathway (30,34,38,59), travelling through the hollow core of the nascent structure (70) and assembling at its distal end (19, 37) (Fig. 1). The process must be a highly organized one, in which protein subunits are incorporated into the growing flagellum in the correct order and stoichiometry (45). The export apparatus obviously must be selective in the proteins it recognizes for export. It may also have to supply energy for the process. Given that the physical path for export is through the nascent structure, it seems likely that the export apparatus is located at the flagellar base (Fig. 1).Essentially nothing is known about this apparatus; specifically, its genetic origin and biochemical composition are completely unknown. We describe here initial attempts to identify its components genetically by use of temperaturesensitive ...