On the basis of analyzing the performance evaluation research of supply chain collaboration and following the level principle of modeling and the construction principles of it, the paper build the index system for manufacturing supply chain collaboration performance evaluation combined with the four necessary links involved of it, namely, logistics, the flow of funds, information flow and market stream. And the synthesized evaluation of it is discussed by using the fuzzy comprehensive evaluation method. And then, taking a typical electronic product manufacturing supply chain as an example for the empirical analysis, some beneficial conclusions and relevant guidance advices have been put forward. Hoping it can provide a theoretical basis and valuable references for carrying out the supply chain collaboration in our manufacturing enterprises.