Ogataea mangiferae sp. nov., a methylotrophic yeast isolated from mango leaves

Santos, Ana Raquel O.; Faria, Elisa Sampaio de; Lachance, Marc‐André; Rosa, Carlos A.

doi:10.1099/ijs.0.000194

Cited by 13 publications

(4 citation statements)

References 16 publications

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“…For Saccharomycetes, we found a total of 1849 sequences (Table 2, Fig. 4), most of them are from several published works, including taxonomic and phylogenetic studies with new records and species from Brazil [94][95][96][97][98][99][100][101]. For Schizosaccharomycetes, the only sequence recovered (JQ726610) is part of a study with yeasts isolated from Brazilian cocoa box fermentations [102].…”

Section: Discussionmentioning

confidence: 99%

Brazilian fungal diversity represented by DNA markers generated over 20 years

Menolli

Sánchez-García

2019

Braz J Microbiol

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Molecular techniques using fungal DNA barcoding (ITS) and other markers have been key to identifying the biodiversity of different geographic areas, mainly in megadiverse countries. Here, we provide an overview of the fungal diversity in Brazil based on DNA markers of phylogenetic importance generated since 1996. We retrieved fungal sequences of ITS, LSU, SSU, tef1-α, β-tubulin, rpb1, rpb2, actin, chitin synthase, and ATP6 from GenBank using different field keywords that indicated their origin in Brazil. A total of 19,440 sequences were recovered. ITS is the most representative marker (11,209 sequences), with 70.1% belonging to Ascomycota, 18.6% Basidiomycota, 10.2% unidentified, 1.1% Mucoromycota, two sequences of Olpidium bornovanus (Fungi incertae sedis), one sequence of Blastocladiomycota (Allomyces arbusculus), and one sequence of Chytridiomycota (Batrachochytrium dendrobatidis). Considering the sequences of all selected markers, only the phyla Cryptomycota and Entorrhizomycota were not represented. Based on ITS, using a cutoff of 98%, all sequences comprise 3047 OTUs, with the majority being Ascomycota (2088 OTUs) and Basidiomycota (681 OTUs). Previous numbers based mainly on morphological and bibliographical data revealed 5264 fungal species from Brazil, with a predominance of Basidiomycota (2741 spp.) and Ascomycota (1881 spp.). The unidentified ITS sequences not assigned to a higher taxonomic level represent 1.61% of all ITS sequences sampled and correspond to 38 unknown class-level lineages (75% cutoff). A maximum likelihood phylogeny based on LSU illustrates the fungal classes occurring in Brazil.

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Section: Discussionmentioning

confidence: 99%

Brazilian fungal diversity represented by DNA markers generated over 20 years

Menolli

Sánchez-García

2019

Braz J Microbiol

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“…K. kurtzmanii , K. mondaviorum , K. phaffii , K. populi , and K. ulmi have frequently been isolated from North America, while K. pastoris and K. pseudopastoris are spread across Europe (Dlauchy et al, 2003; Kurtzman, 2011a, 2012; Miller et al, 1962; Naumov et al, 2018; Phaff et al, 1972). Large‐scale screening of methanol‐assimilating ascomycetous yeasts failed to isolate Komagataella strains in Thailand and Brazil (Limtong et al, 2013; Santos et al, 2015), suggesting that the genus might be absent from these areas. However, rare Komagataella isolates have been documented in Japan (Phaff et al, 1972; Kodama, 1974) and Argentina (Spencer et al, 1995, 1996).…”

Section: Model Yeast Genera In Temperate Forestsmentioning

confidence: 99%

Yeasts from temperate forests

Mozzachiodi

Bai

Baldrián

et al. 2022

Yeast

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Yeasts are ubiquitous in temperate forests. While this broad habitat is well‐defined, the yeasts inhabiting it and their life cycles, niches, and contributions to ecosystem functioning are less understood. Yeasts are present on nearly all sampled substrates in temperate forests worldwide. They associate with soils, macroorganisms, and other habitats and no doubt contribute to broader ecosystem‐wide processes. Researchers have gathered information leading to hypotheses about yeasts' niches and their life cycles based on physiological observations in the laboratory as well as genomic analyses, but the challenge remains to test these hypotheses in the forests themselves. Here, we summarize the habitat and global patterns of yeast diversity, give some information on a handful of well‐studied temperate forest yeast genera, discuss the various strategies to isolate forest yeasts, and explain temperate forest yeasts' contributions to biotechnology. We close with a summary of the many future directions and outstanding questions facing researchers in temperate forest yeast ecology. Yeasts present an exciting opportunity to better understand the hidden world of microbial ecology in this threatened and global habitat.

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“…Moreover, the microbial communities of the phylloplane are dependent of several factors like environmental factors, leaf age, particular growing conditions of the plant, and on the type and density of competing microorganisms [3,6,7]. The phylloplane of plants is colonized by several yeasts of the phyla Ascomycota and Basidiomycota [8][9][10][11][12][13][14][15][16][17][18][19][20][21][22].…”

Section: Introductionmentioning

confidence: 99%

“…The phylloplane yeast community has been studied by both culture-dependent and culture-independent approaches. Recent studies addressed the topic of yeast diversity on the phylloplane of economically relevant crops and both culture-dependent and culture-independent approaches have been employed [13][14][15][16][17][18][19][20][21][22]. As observed for other microbes, the species composition of the yeast communities is not identical when the two approaches are compared or when culture-dependent approaches employ different yeast isolation techniques [16][17][18][19][20][21]23].…”

Section: Introductionmentioning

confidence: 99%

Yeast Diversity Associated with the Phylloplane of Corn Plants Cultivated in Thailand

et al. 2020

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The ecology and diversity of phylloplane yeasts is less well understood in tropical regions than in temperate ones. Therefore, we investigated the yeast diversity associated with the phylloplane of corn, an economically important crop in Thailand, by a culture-dependent method. Thirty-six leaf samples were collected and 217 yeast strains were isolated by plating leaf-washings. The strains were grouped by PCR-fingerprinting and representative strains were identified by analysis of the D1/D2 domain of the large subunit rRNA gene. In total, 212 strains were identified within 10 species in the Ascomycota and 32 species in the Basidiomycota. Five strains represented potential new species in the Basidiomycota, one strain was recently described as Papiliotrema plantarum, and four strains belonged to the genera Vishniacozyma and Rhodotorula. A higher number of strains in the Basidiomycota (81.6%) was obtained. Hannaella sinensis was the species with the highest occurrence. Principal coordinates analysis ordinations of yeast communities revealed that there were no differences in the similarity of the sampling sites. The estimation of the expected species richness showed that the observed species richness was lower than expected. This work indicated that a majority of yeast associated with the phylloplane of corn plant belongs to the phylum Basidiomycota.

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Ogataea mangiferae sp. nov., a methylotrophic yeast isolated from mango leaves

Cited by 13 publications

References 16 publications

Brazilian fungal diversity represented by DNA markers generated over 20 years

Brazilian fungal diversity represented by DNA markers generated over 20 years

Yeasts from temperate forests

Yeast Diversity Associated with the Phylloplane of Corn Plants Cultivated in Thailand

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