PanGeT: Pan-genomics tool

Iyyappan, Yuvaraj; Sridhar, Jayavel; Michael, Daliah; Sekar, K.

doi:10.1016/j.gene.2016.11.025

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Cited by 6 publications

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“…You will need to use relevant technologies for your tool: using LaTeX to produce pangenomics visualizations is fun but needlessly complicated [ 36 ] and there are better, dedicated technologies out there. Common tools in datavis differ from common tools in bioinformatics in general, and you will have to try and get accustomed to unfamiliar technologies and concepts.…”

Section: Introductionmentioning

confidence: 99%

Ten simple rules for developing visualization tools in genomics

et al. 2022

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Section: Introductionmentioning

confidence: 99%

Ten simple rules for developing visualization tools in genomics

et al. 2022

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A Review of Pangenome Tools and Recent Studies

Vernikos¹

2020

The Pangenome

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With the advance of sequencing technologies, the landscape of genomic analysis has been transformed, by moving from single strain to species (or even higher taxa)-wide genomic resolution, toward the direction of capturing the “totality” of life diversity; from this scientific advance and curiosity, the concept of “pangenome” was born. Herein we will review, from practical and technical implementation, existing projects of pangenome analysis, with the aim of providing the reader with a snapshot of useful tools should they need to embark on such a pangenomic journey.

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