Phylogeography and the genetic structure of the land-locked freshwater prawn Macrobrachium asperulum (Crustacea: Decapoda: Palaemonidae) in Taiwan

Liu, Min-Yun; Tzeng, Chyng‐Shyan; Lin, Hung‐Du

doi:10.1007/s10750-011-0699-z

Cited by 25 publications

(25 citation statements)

References 51 publications

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“…De Jong et al (2011) attributed these subtle differences to geographical isolation. This would be in line with the reports of many authors, which have reported the genetic effects of human introduction on some freshwater animals (Shih et al 2004;Wang et al 2004;Liu et al 2011).…”

supporting

confidence: 92%

The first mitochondrial genome of Macrobrachium rosenbergii from China: phylogeny and gene rearrangement within Caridea

Song

Shen

et al. 2018

Mitochondrial DNA Part B

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Macrobrachium rosenbergii de Man, 1879 (Caridea: Palaemonidae), commonly referred to as giant freshwater prawn, is commercially important worldwide, and a primary inland cultured species. The first complete mitochondrial genome of M. rosenbergii from China (CN) was sequenced and compared with that in Indonesia (ID) in this study. The results show that the total length of CN-mtDNA sequence is 15,767 bp (GenBank accession number: KY865098), which is shorter than that of ID-mtDNA (15,772 bp). It encodes 37 genes, including 13 protein-coding genes, 22 transfer RNA genes and 2 ribosomal RNA genes. The heavy strand and light strand encode 23 and 14 genes, respectively, and the content of A þ T is 61.81%. The gene order and content of CN-mtDNA and ID-mtDNA are identical to the primitive Pancrustacean ground pattern. Phylogenetic analysis shows that CN-mtDNA is clustered into one clade with ID-mtDNA (BP ¼100). Pairwise genetic distance analyses indicate that the genetic distance of CN-mtDNA and ID-mtDNA is 0.086, which is smaller than values between species in the Macrobrachium genus. In summary, both phylogenetic analysis and gene re-arrrangement analysis between the M. rosenbergii in China and Indonesia have revealed that their differences are within intraspecific variation.

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supporting

confidence: 92%

The first mitochondrial genome of Macrobrachium rosenbergii from China: phylogeny and gene rearrangement within Caridea

Song

Shen

et al. 2018

Mitochondrial DNA Part B

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“…This outcome is different from the outcomes that were often found of a high degree of phylogeographically related genetic structure [11, 42, 47, 48, 49, 50, 51, 52, 53, 54]. This might be because the expansion time for lineage A (209,533 yrs ago) or lineage B (49,248 yrs ago) were too short to accumulate enough genetic variation and form geographically unique clade [55, 56, 57].…”

Section: Discussionmentioning

confidence: 59%

Phylogeography and genetic structure of the oriental river prawn Macrobrachium nipponense (Crustacea: Decapoda: Palaemonidae) in East Asia

et al. 2017

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The oriental river prawn (Macrobrachium nipponense) is mainly distributed in East Asia. The phylogeography, population genetic structure and historical demography of this species in the East Asia were examined by using partial sequences of the cytochrome oxidase subunit I (COI) and 16S rRNA in mitochondrial DNA. Ten populations that included 239 individuals were collected from Taiwan (Shihmen Reservoir, SMR, Mingte Reservoir, MTR and Chengching Lake Reservoir, CLR), mainland China (Taihu Lake, TLC, Min River, MRC, Jiulong River, JRC and Shenzhen Reservoir, SRC), Japan (Biwa Lake, BLJ and Kasumigaura Lake, KLJ) and Korea (Han River, HRK). The nucleotide diversity (π) of all individuals was 0.01134, with values ranging from 0.0089 (BLJ, Japan) to 0.01425 (MTR, Taiwan). A total of 83 haplotypes were obtained, and the haplotypes were divided into 2 main lineages: lineage A included the specimens from BLJ, KLJ, CLR, MTR, TLC, MRC and JRC, and lineage B comprised the ones from HRK, SRC, SMR, MTR, TLC, MRC and JRC. Lineage A could be further divided two sub-lineages (A1 and A2). Individuals of lineage A2 were only from TLC. Demographic expansion was observed in each lineage, starting within the second-to-latest interglacial period for lineage A and within the last glacial period for lineage B. All FST values among the ten populations were significantly different, except for the values between MRC and JRC, and SMR and SRC. The phylogeography and genetic structure of M. nipponense in East Asia might be influenced by Pleistocene glacial cycles, lake isolation and human introduction. The possible dispersal routes of M. nipponense in the East Asia were also discussed.

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“…Previous studies have shown that several factors, such as glacial events and mountain-island isolations, promoted the diversity of endemic species on Taiwan Island (Huang and Lin 2010;Liu et al 2011;Oshida et al 2011;Tsai et al 2014). The taxa that dwell at alpine areas in mountainous Taiwan have had particular association with the periodical glaciation events which brought biota from high-latitude regions to this island.…”

Section: Discussionmentioning

confidence: 99%

“…Previous studies have shown that several factors, such as glacial events and mountain–island isolations, promoted the diversity of endemic species on Taiwan Island (Huang and Lin ; Liu et al. ; Oshida et al. ; Tsai et al.…”

Section: Discussionmentioning

confidence: 99%

“…More than 50 studies have addressed the population differentiation and phylogeographical pattern of Taiwanese biota, but few of these biota come from alpine zone and none of these studies deals with the mountainisland effect (Wang et al 2000(Wang et al , 2004Chang and Chen 2005a;Chiang et al 2010;Liu et al 2011;Oshida et al 2011;Jean et al 2014). The carabid taxa restricted to alpine environment with low dispersal capability should have experienced similar geological events of orogenesis and periodical glaciations.…”

Section: Introductionmentioning

confidence: 99%

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A comparative phylogeographic study reveals discordant evolutionary histories of alpine ground beetles (Coleoptera, Carabidae)

Weng

Yang

Yeh

2016

Ecology and Evolution

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Taiwan, an island with three major mountain ranges, provides an ideal topography to study mountain–island effect on organisms that would be diversified in the isolation areas. Glaciations, however, might drive these organisms to lower elevations, causing gene flow among previously isolated populations. Two hypotheses have been proposed to depict the possible refugia for alpine organisms during glaciations. Nunatak hypothesis suggests that alpine species might have stayed in situ in high mountain areas during glaciations. Massif de refuge, on the other hand, proposes that alpine species might have migrated to lower ice‐free areas. By sampling five sympatric carabid species of Nebria and Leistus, and using two mitochondrial genes and two nuclear genes, we evaluated the mountain–island effect on alpine carabids and tested the two proposed hypotheses with comparative phylogeographic method. Results from the phylogenetic relationships, network analysis, lineage calibration, and genetic structure indicate that the deep divergence among populations in all L. smetanai, N. formosana, and N. niitakana was subjected to long‐term isolation, a phenomenon in agreement with the nunatak hypothesis. However, genetic admixture among populations of N. uenoiana and some populations of L. nokoensis complex suggests that gene flow occurred during glaciations, as a massif de refuge depicts. The speciation event in N. niitakana is estimated to have occurred before 1.89 million years ago (Mya), while differentiation among isolated populations in N. niitakana, N. formosana, L. smetanai, and L. nokoensis complex might have taken place during 0.65–1.65 Mya. While each of the alpine carabids arriving in Taiwan during different glaciation events acquired its evolutionary history, all of them had confronted the existing mountain ranges.

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Phylogeography and the genetic structure of the land-locked freshwater prawn Macrobrachium asperulum (Crustacea: Decapoda: Palaemonidae) in Taiwan

Abstract: Macrobrachium asperulum is a landlocked macroinvertebrate species of freshwater prawn, which inhabits a wide range of freshwater bodies and has an abundant pan-island distribution in Taiwan. In this study, we used mitochondrial (mt)

Cited by 25 publications

References 51 publications

The first mitochondrial genome of Macrobrachium rosenbergii from China: phylogeny and gene rearrangement within Caridea

The first mitochondrial genome of Macrobrachium rosenbergii from China: phylogeny and gene rearrangement within Caridea

Phylogeography and genetic structure of the oriental river prawn Macrobrachium nipponense (Crustacea: Decapoda: Palaemonidae) in East Asia

A comparative phylogeographic study reveals discordant evolutionary histories of alpine ground beetles (Coleoptera, Carabidae)

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