Polymorphic microsatellite markers in <i>Ictalurus punctatus</i> and related catfish species

Tan, G.; Karsi, Attila; Li, P.; Kim, S.; Zheng, Xinmin; Kucuktas, Huseyin; Argue, Brad J.; Dunham, Rex A.; Liu, Z. J.

doi:10.1046/j.1365-294x.1999.00723-3.x

Cited by 28 publications

(17 citation statements)

References 9 publications

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“…These values are similar to those described for a research catfish line (I. punctatus) line in Auburn USA using a microsatellite panel which including the five used in our study (Tan et al, 1999) and for selected strains and farmed wild catfish (I. punctatus) populations (Waldbieser et al, 2001). The Prodatec farm (P) showed the highest difference between observed and expected heterozygosity.…”

supporting

confidence: 84%

“…The channel catfish (Ictalurus punctatus) is one of the world-wide highlight species in aquaculture and has been subject of several genomic studies which have led to the development of different molecular markers (Carmichael et al, 1992;Waldbieser and Bosworth, 1997;Liu et al, 1998a;1998b;1999a;1999b;1999c, 1999d; Tan et al, 1999;Waldbieser et al, 2001). Mickett et al (2003), proposed that understanding the genetic variation within domestic catfish populations is a main requirement for maximizing the selective breeding of this species.…”

mentioning

confidence: 99%

“…Genetics and Molecular Biology, 30, 3, 570-574 (2007) Copyright by the Brazilian Society of Genetics. Printed in Brazil www.sbg.org.br Tan et al (1999) reported a group of microsatellites markers, which were described as effective in analysis of the Ictaluridae genome, especially in studies of genetic resource analysis, stocking success evaluation, population structure, paternity identification and molecular systematics.…”

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confidence: 99%

“…Genetic diversity at five microsatellite loci was determinate using primers Ip077, Ip591, Ip265, Ip427 and Ip607 reported as useful for amplification studies in several ictalurid catfish (Tan et al, 1999). The PCR conditions for each loci were individually optimized.…”

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Microsatellite variability analysis in farmed catfish (Ictalurus punctatus) from Tamaulipas, Mexico

2007

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Analysis of cultured catfish from six farms in Tamaulipas, Mexico was achieved using a combination of microsatellite PCR analysis and semiautomatic fluoresce-based detection, in order to provide a first assessment of the genetic variability on cultured catfish in Mexico. Five microsatellites showed extensive polymorphism with allele numbers ranging from 10 and 20. Overall observed heterozygosity at each locus ranged between 0.76 and 0.91 and the average polymorphic information content (PIC) for the five loci was 0.811, indicating that these loci can be used for studies of paternity identification, linkage and population genetics. On the basis of the F ST values (F ST = 0.03829; p = 0.00000) it appears that there was a small amount of genetic differentiation between the channel catfish stocks. The high intrapopulation allelic diversity was the most remarkable parameter.

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confidence: 99%

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confidence: 99%

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confidence: 99%

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Microsatellite variability analysis in farmed catfish (Ictalurus punctatus) from Tamaulipas, Mexico

2007

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“…Similar efforts are also going for striped bass. Similarly, a lot of progress has been made in the development of microsatellite markers in Atlantic Salmon (Houston et al, 2012), catfishes (Liu 2003;2001c;Tan et al, 1999) tilapias (Carleton et al, 2002Palti et al, 2001;Streelman and Kocher 2002;Cnaani et al, 2002), Penaeid shrimps (Xu et al, 1999), common carp (Tanck et al, 2001) and chinook salmon Naish and Park 2002). Likewise, AFLPs for species like channel catfish and blue catfish (Liu et al, 1998b, rainbow trout (Young et al, 1998) and oysters (Li and Guo 2004;Yu and guo 2003); RAPDs for catfish (Liu et al, 1998a(Liu et al, , 1999b and Asian arowana (Yue et al, 2002); and SNPs for catfish (He et al, 2003b) have been developed.…”

Section: New Molecular Markers Made Available In Aquaculture Speciesmentioning

confidence: 99%

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Hakim¹

2017

GenAqua

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Although aquaculture management becomes challenging because of overuse, pollution and human activities reduced resources and genetic variations, current developments in molecular technology and genome programs have created an enormous evidence to be used for the genetic advancement of aquaculture. Over the past decade, using molecular markers showed polymorphism at the DNA level and played rising role in aquaculture. The utility of DNA markers has certified the hastiness in the exploration of fish germplasm. Various molecular markers present and their differences in principles, methodologies and applications still need careful consideration in selecting more useful marker for the successful management of aquaculture. In addition to the basic principles, necessities, pros and cons of various markers, this review also discusses their usage in different aspects of aquaculture; we provide an overview of the potential of various techniques of functional genomics like expressed sequence tags (EST), microarrays and RNA sequencing in aquaculture.

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A review of catfish genomics: progress and perspectives

Liu

2003

Comp Funct Genom

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Catfish is one of the lower teleosts whose genome research is important for evolutionary genomics. As the major aquaculture species in the USA, its genome research also has practical and economical implications. Much progress has been made in recent years, including the development of large numbers of molecular markers, the construction of framework genetic linkage maps, the identification of putative markers involved in performance traits, and the development of genomic resources. Repetitive elements have been identified and characterized in the catfish genome that should facilitate physical analysis of the catfish genome. A large number of genes or full-length cDNAs have been analysed using genomic approaches, providing information on gene structure, gene evolution and gene expression in relation to functions. Catfish genome research has come to a stage when physical mapping through BAC contig construction is greatly demanded, in order to develop regional markers for QTL analysis and for large-scale comparative mapping. The current effort in large-scale EST analysis and type I marker mapping should further enhance research efficiency through comparative mapping. Candidate gene identification is being accelerated through the use of cDNA microarrays.

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Polymorphic microsatellite markers in Ictalurus punctatus and related catfish species

Cited by 28 publications

References 9 publications

Microsatellite variability analysis in farmed catfish (Ictalurus punctatus) from Tamaulipas, Mexico

Microsatellite variability analysis in farmed catfish (Ictalurus punctatus) from Tamaulipas, Mexico

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A review of catfish genomics: progress and perspectives

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