Understanding the feeding behavior of Portunidae crabs with different baits can improve bait selection and is crucial for improving the effectiveness of crab fishing gear. This study, conducted in indoor experimental tanks, used trajectory tracking software and two types of natural baits (mackerel (Scomber australasicus) and squid (Uroteuthis chinensis)) to understand the behavior of Portunus sanguinolentus and Charybdis natator. Spatial distribution results showed that P. sanguinolentus was frequently present in the starting area (S1) and bait area (S3) in the control and treatment groups. However, C. natator was frequently present and concentrated in the S1 area compared to the middle areas S2 and S3, and only in the mackerel treatments were they observed to move to the S3 areas. The spatial distribution results indicate that P. sanguinolentus shows a stronger willingness to explore its surroundings, while C. natator is generally in a stationary, wait-and-see state. The swimming speeds of P. sanguinolentus and C. natator showed different trends. P. sanguinolentus showed continuous movement with no fixed speed when no bait was present in the control groups. However, when treated with mackerel and squid, the average swimming speed of P. sanguinolentus was faster (>5 cm/s) in the first 10 min and showed a more stable movement speed when searching for the baits. C. natator showed a stationary or low movement speed when no bait was present in the control groups. However, when C. natator perceived the presence of the baits in the treatment groups, their movement speed increased in the first 10 min. In addition, there was no significant difference between male and female crabs of P. sanguinolentus and C. natator in movement speed in the control and treatment groups. Compared to C. natator, P. sanguinolentus might be more sensitive to natural baits, as shown by its movement from S1 to S3. The results indicate that the species of Portunidae crabs show different bait selections. Natural baits (mackerel and squid) are recommended for catching P. sanguinolentus in crab fisheries.