Hydropower depends on the elevation head and water flow of a river. However, other factors must be considered, such as the risk associated with surface processes and environmental factors. The study aims to analyze a landscape’s dynamics and locate potential sites for small-scale hydropower systems (<10 MW) using a geographic information system, the curve number method, and the TopoToolbox with a digital elevation model and available spatial datasets. Across Bohol Island in the central Philippines, the study found 94 potential sites with hydraulic heads ranging from 20–62.4 m, river discharges between 0.02 to 9.71 m3/s, and a total hydropower capacity of 13.595 MW. The river profile analysis classified the sites to five levels of risk to geo-hazards, with three-fourths of the sites being at ‘high’ to ‘very high’ risk levels while more than 50% of the total power can be generated in ‘low’ risk areas. Land-use and population constraints reduced the sites to 25 and the hydropower capacity by 60%. Although limited to the table assessment phase of hydropower development, the study showed the potential of small-scale hydropower systems in the study area, their spatial distribution, and the risk associated with each site. The study results provided data-limited resource managers’ and energy planners’ insights in targeting potential locations and minimizing field investigation costs and time.