2023
DOI: 10.1101/2023.07.07.548148
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Prioritized imputed sequence variants from multi-population GWAS improve prediction accuracy for sea lice count in Atlantic salmon (Salmo salar)

Abstract: Sea lice infestation is one of the major fish health problems during the grow-out phase in Atlantic salmon (Salmo salar) aquaculture. In this study, we integrated different genomic approaches, including whole-genome sequencing (WGS), genotype imputation and meta-analysis of genome-wide association studies (GWAS), to identify single-nucleotide polymorphisms (SNPs) associated with sea lice count in Atlantic salmon. Different sets of trait-associated SNPs were prioritized and compared against randomly chosen mark… Show more

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