This research is mainly aimed to identify the geological and geomorphological structure of watersheds that influence some of the processes of hydrology, from a 3D model, created with tweens numerical terrain models and satellite images. The study area represented located in Northeastern Brazil, state of Bahia, municipality of Lençóis and makes reference to three watersheds. The creation of the model was based on the manipulation of altimetry data from of images orbital's interferometric the Topodata and SRTM projects, with the support of the images QuickBird, plus some field campaigns of investigation and use of the Navigation System and Global positioning (GPS-GNSS).In possession of these data ,have been applied specific techniques of remote sensing and geoprocessing in GIS with ArcGIS 10.1 software. With the use of geostatistics tools, using filters and optimal arrangement of spectral bands was possible to extract a greater number of information physical and environmental and propose a three-dimensional model that simulates the shapes of the land in a watershed. The results show that with the modeling threedimensional was possible to identify with a good accuracy level, the slope, types of topographic compartments, structural geology of faults through lineaments and deformation and the dynamics of runoff and infiltration the hydrographic system. With such a model is also evident in the intense correlation structural geology, compartments and hydrological processes.