Mangroves are defined as woody, evergreen group of plant community; grow on the swampy substrate at tropical and sub-tropical habitats, adjusted to high salinity, periodical tidal influence, strong winds, high temperatures, high precipitation and anaerobic soils. They possess unique morphological and physiological adaptive features to cope with these extreme conditions. Mangrove vegetation is the cradle of several marine fauna and provides first line of defense against devastating sea surges, typhoon, tsunami, etc. However, since industrial era, many of the mangrove members were affected by several environmental constrains and anthropogenic activities that raised the sea level, lowered sweet water influx from the adjacent rivers and encroachment for the new settlement formation, increasing salinity. Hence, mangrove restoration program is the front line topic of interest to the plant biologists across the tropical and subtropical world since it has a productive and protective role for the inhabitants. A detailed study of DNA polymorphism of the individual taxa will be provide an advantage for this initiative as the wide genetic plasticity is a prerequisite for sustainability in changed environment. Recent advancement in molecular markers assisted PCR technique will provide the information regarding genetic background of each individual taxon, ultimately leading to valid guided references towards the understanding the inherent nature of the plant itself and beneficial to proper restoration program.