Antimicrobial Peptides 2023
DOI: 10.1016/b978-0-323-85682-9.00001-5
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Recent advances and challenges in peptide drug development

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Cited by 2 publications
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“…Z‐ DOCK [ 109 ] is one such program that produces accurate PPI predictions if accurate scoring scaffolds are given. [ 110,111 ] To produce more precise predictions on the binding affinities between the interacting proteins, flexible‐body docking methods require structural information such as the hydrogen bonds, buried area of the surface, allosteric effects, angles of geometry, and hotspots for mutation for calculations of binding free energies. [ 112 ] The well‐known PPI prediction service ATTRACT [ 113 ] has robust toolkits that cover a wide range of scoring parameters, although it is a bit complex to operate.…”
Section: Peptide Designing and Molecular Docking: The Ultimate Saviormentioning
confidence: 99%
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“…Z‐ DOCK [ 109 ] is one such program that produces accurate PPI predictions if accurate scoring scaffolds are given. [ 110,111 ] To produce more precise predictions on the binding affinities between the interacting proteins, flexible‐body docking methods require structural information such as the hydrogen bonds, buried area of the surface, allosteric effects, angles of geometry, and hotspots for mutation for calculations of binding free energies. [ 112 ] The well‐known PPI prediction service ATTRACT [ 113 ] has robust toolkits that cover a wide range of scoring parameters, although it is a bit complex to operate.…”
Section: Peptide Designing and Molecular Docking: The Ultimate Saviormentioning
confidence: 99%
“…[ 117,118 ] The most widely used techniques that offer several strategies for determining peptide‐binding sites are Rosetta FlexPepDock, [ 119 ] and PepCrawler. [ 111,120 ] Rosetta FlexPepDock [ 119 ] reduces optimization stages to produce outstanding conformational samples for binding motifs well characterized with the residues of hotspots. It is a Monte Carlo‐based method.…”
Section: Peptide Designing and Molecular Docking: The Ultimate Saviormentioning
confidence: 99%