Recent studies on advance spectroscopic techniques for the identification of microorganisms: A review

Strain typing and antimicrobial susceptibility of Salmonella enterica Albany isolates from duck farms in South Korea

“…On the other hand, IRBT analyzes molecular structures such as carbohydrate composition [ 36 ]. IRBT has recently become an alternate method for bacterial typing due to its ease of use and high discriminatory power in recognizing clonal relationships among bacterial isolates [ 11 ]. This is an automated system that is simple, quick, and reliable [ 37 ].…”

“…Microorganisms can be characterized according to their strain-specific absorbance patterns in the infrared spectrum [ 10 ]. FTIR spectroscopy has recently become an alternative to bacterial typing due to its ease of use and high discriminatory power in recognizing clonal relationships among bacterial isolates [ 11 ]. The IR Biotyper® system (IRBT, Bruker Daltonics GmbH & Co. KG, Bremen, Germany), based on FTIR technology, is a device that enables easy and fast strain typing [ 12 ].…”

The assessment of bacterial diversity in CO2 treated and untreated raw milk during cold storage using high‐throughput sequencing technology

“…The project data and code can be accessed at http://www.omicsmart.com. Statistical analyses were performed in R (Tas et al ., 2021; Meslier et al ., 2022; Ramzan et al ., 2023) with three replicates per group for data handling. Mean spore counts for each bedding type were compared using ANOVA with Tukey's honestly significant difference in R using agricolae (Mendiburu, 2017).…”

Illuminating the Tiny World: A Navigation Guide for Proper Raman Studies on Microorganisms

“…Since Raman spectroscopy always samples all biomolecules inside the probing volume, most Raman methods are phenotypic which means the information of all biomolecules can be found in the Raman spectra of bacteria [ 15 , 16 , 17 , 18 , 19 ]. In principle, there are two types of Raman measurements of bacteria—bulk samples and single-cell measurements.…”

“…The appropriate strain selection is mainly related to the nature of the study, the study topic, and the specific research question asked (Figure 3). Since Raman spectroscopy always samples all biomolecules inside the probing volume, most Raman methods are phenotypic which means the information of all biomolecules can be found in the Raman spectra of bacteria [15][16][17][18][19]. In principle, there are two types of Raman measurements of bacteria-bulk samples and single-cell measurements.…”