In the past two decades, evolutionary studies of reef corals have greatly advanced owing to the intriguing characteristics of corals, such as hybridization and synchronous mass spawning, and development of molecular techniques. These evolutionary works have mainly focused on the genus Acropora because of its dominance. It has the highest number of species and is a major member of the mass spawning event, which characteristics suggest its unusual evolutionary process called "reticulate evolution." Although studies using other corals have been very limited, some have demonstrated obscure species boundaries between closely related species, implying hybridization in the present or past. Most of these studies used genetic analysis, because it is very useful for investigation of species and population relationships among and within regions and to infer phylogenetic relationships from the species level to higher taxonomic levels. For anyone wishing to study the evolution and taxonomy of corals, familiarity with these molecular works, even for nongenetic analysts, is essential. This review summarizes the evolutionary studies of reef corals using molecular analyses.Keywords Acropora, Montastraea, Faviidae, Mitochondria, reticulate evolution
IntroductionThe discovery of synchronous mass spawning in scleractinian corals (Harrison et al. 1984, Babcock et al. 1986) triggered the evolutionary study of reef corals (hereinafter "coral (s)" means the zooxanthellate scleractinian corals or reef corals), especially with regard to hybridization. In addition, genetic analysis of corals rendered these evolutionary studies highly advanced over the past two decades. During this period, two hypotheses were proposed, which strongly infl uenced coral scientists.(1) Hypothesis of reticulate evolution of coral proposed by Veron (1995), according to which corals repeat speciation and hybridization in an evolutionary time scale. (2) The hypothesis of Palumbi (1996, 1997) based on the molecular-based phylogeny of the suborders of the scleractinian corals using the mitochondrial (mt) 16s ribosomal DNA (rDNA), in which the scleractinian corals are separated into two major clades-Robust and Complex-and is called the two-clade hypothesis (Chen et al. 2002).In studies that support the reticulate evolution hypothesis, genetic analysis and the genus Acropora played an important role. In fact, the most genetically analyzed corals were the Acropora species (e.g., Hatta et al. 1999; Márquez et al. 2002;