IntroductionDeveloping an intensive sustainable model and feeding a rising population are worldwide challenges. The task is much more daunting in the North Eastern Himalayas, where, low productive maize (Zea mays)maize (Zea mays) fallow is the main production system in the upland. To increase farm productivity, nutritional security, and energy dietary returns while maintaining environmental sustainability and economic viability, short-duration crops must be included in the maize–fallow system.MethodsA field study was conducted in sandy clay loam soil with a randomized complete block design with three replications for three continuous years (2018–2021) under organic management with two crop management practices, viz., (i) conservation agriculture and (ii) conventional agriculture, and six crop diversification options, viz., (i) maize–sweet corn (Zea mays saccharata)–vegetable pea (Pisum sativa) (M-SC-VP), (ii) maize–sweet corn-mustard (Brassica juncea) (M-SC-M), (iii) maize–sweet corn–lentil (Lens culinaris) (M-SC-L), (iv) maize–sweet corn–vegetable broad bean (Vicia faba) (M-SC-VB), (v) maize (local)–vegetable pea (M-VP), and (vi) maize (local)–fallow (M-F).ResultsThe results showed that, the average system productivity was 5.3% lower for conventional agriculture than conservation agriculture. System carbohydrate, protein, fat, dietary fiber, and dietary energy were ~6.9, 6.8, 7.8, 6.7, and 7%, higher in conservation agriculture than in conventional agriculture, respectively. Similarly, system macronutrients (Ca, Mg, P, and K) and system micronutrients yield (Fe, Mn, Zn, and Cu) were, 5.2–8% and 6.9–7.4% higher in conservation agriculture than in conventional agriculture, respectively. On average, over the years, crop diversification with M-SC-VP/M-SC-VB intensive crop rotation had higher system productivity (158%), production efficiency (157%), net returns (benefit–cost ratio) (44%), and dietary net energy returns (16.6%) than the local maize–vegetable pea system. Similarly, the M-SC-VP/M-SC-VB system improved the nutritional security by improving Ca, Mg, P, K, Fe, Mn, Zn, and Cu yield by 35.5–135.7% than the local M-VP system.DiscussionConservation agriculture with M-SC-VP/M-SC-VB rotation showed significantly (p < 0.05) higher productivity, carbohydrate yield, protein yield, fat yield, and dietary fiber production. It is concluded that conservation agriculture improved soil health and performed better than conventional agriculture in maize-based intensive cropping systems. Overall results indicate that crop diversification with M-SC-VP/M-SC-VB can potentially increase calorie and protein consumption and farm profitability.