word count: 212 Abstract 22The ability of Salmonella to survive and replicate within mammalian host cells involves the 23 generation of a membranous compartment known as the Salmonella-containing vacuole 24 (SCV). Salmonella employs a number of effector proteins that are injected into host cells for 25 SCV formation using its type-three secretion systems encoded in SPI-1 and SPI-2 (T3SSSPI-1 26 and T3SSSPI-2, respectively). Recently, we reported that S. Typhimurium requires T3SSSPI-1 27 and T3SSSPI-2 to survive in the model amoeba Dictyostelium discoideum. Despite these 28 findings, the involved effector proteins have not been identified yet. Therefore, we evaluated 29 the role of two major S. Typhimurium effectors SopB and SifA during D. discoideum 30 intracellular niche formation. First, we established that S. Typhimurium resides in a vacuolar 31 compartment within D. discoideum. Next, we isolated SCVs from amoebae infected with wild 32 type or the DsopB and DsifA mutant strains of S. Typhimurium, and we characterized the 33 composition of this compartment by quantitative proteomics. This comparative analysis 34 suggests that S. Typhimurium requires SopB and SifA to modify the SCV proteome in order 35 to generate a suitable intracellular niche in D. discoideum. Accordingly, we observed that 36 SopB and SifA are needed for intracellular survival of S. Typhimurium in this organism. Thus, 37 our results provide insight into the mechanisms employed by Salmonella to survive 38 intracellularly in phagocytic amoebae. 39 40 Importance
41The molecular mechanisms involved in Salmonella survival to predation by phagocytic 42 amoebae, such as D. discoideum, remains poorly understood. Although we established that 43 S. Typhimurium requires two specialized type-three secretion systems to survive in D. 44 discoideum, no effector protein has been implicated in this process so far. Here, we 45 confirmed the presence of a membrane-bound compartment containing S. Typhimurium in D. 46 discoideum, and purified the D. discoideum SCV to characterize the associated proteome. In 47 doing so, we established a key role for effector proteins SopB and SifA in remodeling the 48 protein content of the SCV that ultimately allow the intracellular survival of S. Typhimurium in 49 D. discoideum. We also discuss similarities and differences with the proteomes of the human 50 SCV. These findings contribute to unravel the mechanisms used by Salmonella to survive in 51 the environment exploiting phagocytic amoebae as a reservoir.52 55 Bacteria from the Salmonella genus infect warm-blooded animals targeting the 56 gastrointestinal tract. Particular serotypes, such as Salmonella enterica serovar Typhimurium 57 (S. Typhimurium), represent major leading causes of gastroenteritis in humans in developing 58 countries (1). Overall, Salmonella infections account for over 150,000 deaths annually in the 59 world, most of them associated with foodborne infections (1).
60Among the essential genes required for Salmonella virulence, pathogenicity islands SPI-1 61...