Resource recovery from wastewater: application of meta-omics to phosphorus and carbon management

Sales, Christopher M.; Lee, Patrick K. H.

doi:10.1016/j.copbio.2015.03.003

Cited by 25 publications

(2 citation statements)

References 51 publications

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“…Integration of these meta-omics approaches allows for the systematic study of microbial species, genes, metabolites, and activities; it contributes to our understanding of the organization, function, and interactions of organisms within communities (10, 11). Meta-omics approaches have shed light onto complex microbial communities that were once unknown (12), for example, microbiota in acid mine drainage (13), gastrointestinal microbiota (14), and microbiota in fermentation processes (15). Therefore, integration of meta-omics approaches is useful in the study of the microbiome in food fermentation.…”

Section: Introductionmentioning

confidence: 99%

Integrated Meta-omics Approaches To Understand the Microbiome of Spontaneous Fermentation of Traditional Chinese Pu-erh Tea

et al. 2019

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Fermented foods play important roles in diets worldwide and account for approximately one-third of all foods and beverages consumed. To date, traditional fermentation has used spontaneous fermentation. The microbiome in fermentation has direct impacts on the quality and safety of fermented foods and contributes to the preservation of traditional methods. Here, we used an integrated meta-omics approach to study the microbiome in the fermentation of pu-erh tea, which is a well-known Chinese fermented food with a special flavor and healthful benefits. This study advanced the knowledge of microbiota, metabolites, and enzymes in the fermentation of pu-erh tea. These novel insights shed light onto the complex microbiome in pu-erh fermentation and highlight the power of integrated meta-omics approaches in understanding the microbiome in food fermentation ecosystems.

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Section: Introductionmentioning

confidence: 99%

Integrated Meta-omics Approaches To Understand the Microbiome of Spontaneous Fermentation of Traditional Chinese Pu-erh Tea

et al. 2019

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“…Thus, it is important to assign ARGs to their corresponding carriers, which are both hosts for executing resistance functions and targets for dietary intervention. A genome-centric metagenomic analysis can provide direct insight into the function and physiology of individual community members by reconstructing bacterial genomes in environmental samples 25 . With the Canopy-based algorithm, we assigned 201 ARGs to 120 co-abundance gene groups.…”

Section: Discussionmentioning

confidence: 99%

Diminution of the gut resistome after a gut microbiota-targeted dietary intervention in obese children

Zhang

Wang

et al. 2016

Sci Rep

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The gut microbiome represents an important reservoir of antibiotic resistance genes (ARGs). Effective methods are urgently needed for managing the gut resistome to fight against the antibiotic resistance threat. In this study, we show that a gut microbiota-targeted dietary intervention, which shifts the dominant fermentation of gut bacteria from protein to carbohydrate, significantly diminished the gut resistome and alleviated metabolic syndrome in obese children. Of the non-redundant metagenomic gene catalog of ~2 × 106 microbial genes, 399 ARGs were identified in 131 gene types and conferred resistance to 47 antibiotics. Both the richness and diversity of the gut resistome were significantly reduced after the intervention. A total of 201 of the 399 ARGs were carried in 120 co-abundance gene groups (CAGs) directly binned from the gene catalog across both pre-and post-intervention samples. The intervention significantly reduced several CAGs in Klebsiella, Enterobacter and Escherichia, which were the major hubs for multiple resistance gene types. Thus, dietary intervention may become a potentially effective method for diminishing the gut resistome.

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Dual‐Function Electrocatalytic and Macroporous Hollow‐Fiber Cathode for Converting Waste Streams to Valuable Resources Using Microbial Electrochemical Systems

et al. 2018

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Dual-function electrocatalytic and macroporous hollow-fiber cathodes are recently proposed as promising advanced material for maximizing the conversion of waste streams such as wastewater and waste CO to valuable resources (e.g., clean freshwater, energy, value-added chemicals) in microbial electrochemical systems. The first part of this progress report reviews recent developments in this type of cathode architecture for the simultaneous recovery of clean freshwater and energy from wastewater. Critical insights are provided on suitable materials for fabricating these cathodes, as well as addressing some challenges in the fabrication process with proposed strategies to overcome them. The second and complementary part of the progress report highlights how the unique features of this cathode architecture can solve one of the intrinsic bottlenecks (gas-liquid mass transfer limitation) in the application of microbial electrochemical systems for CO reduction to value-added products. Strategies to further improve the availability of CO to microbial catalysts on the cathode are proposed. The importance of understanding microbe-cathode interactions, as well as electron transfer mechanisms at the cathode-cell and cell-cell interface to better design dual-function macroporous hollow-fiber cathodes, is critically discussed with insights on how the choice of material is important in facilitating direct electron transfer versus mediated electron transfer.

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Resource recovery from wastewater: application of meta-omics to phosphorus and carbon management

Cited by 25 publications

References 51 publications

Integrated Meta-omics Approaches To Understand the Microbiome of Spontaneous Fermentation of Traditional Chinese Pu-erh Tea

Integrated Meta-omics Approaches To Understand the Microbiome of Spontaneous Fermentation of Traditional Chinese Pu-erh Tea

Diminution of the gut resistome after a gut microbiota-targeted dietary intervention in obese children

Dual‐Function Electrocatalytic and Macroporous Hollow‐Fiber Cathode for Converting Waste Streams to Valuable Resources Using Microbial Electrochemical Systems

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