Retraction Note to: Inferring Phylogenetic Relationships of Indian Citron (Citrus medica L.) Based on rbcL and matK Sequences of Chloroplast DNA

Uchoi, Ajit; Malik, Sunil; Choudhary, Ravish; Kumar, Susheel; Rohini, M. R.; Pal, Digvender; Erċışlı, Sezai; Chaudhury, Rekha

doi:10.1007/s10528-019-09939-9

Cited by 2 publications

(2 citation statements)

References 5 publications

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“…There are many studies in Citrus using various molecular markers, e.g. RAPD (Coletta Filho et al 1998;Nicolosi et al 2000), ISSR (Fang and Roose 1997), AFLP (Al-Nadabi et al 2018), SSR (Jannati et al 2009), as well as chloroplast DNA (Nicolosi et al 2000;Penjor et al 2010;Wali et al 2013;Oueslati et al 2016;Uchoi et al 2016;Sevindik and Yalçın 2018) and nuclear ribosomal DNA (nrDNA) markers (Amar et al 2014;Sun et al 2015). In this study, we obtained psbA-trnH sequences ranging from 426 to 470 nucleotides for 11 specimens.…”

Section: Resultsmentioning

confidence: 86%

Sequences analysis of chloroplast psbA-trnH region in Citrus L. (Rutaceae) species from the Aegean region of Turkey

Sevindik

Canbolat

Moral

et al. 2021

Nova Biotechnol. Chim.

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In this study, sequences analysis of some Citrus species distributed in Turkey's Aegean region was based on the cpDNA psbA-trnH region. The sequences for psbA-trnH regions of the outgroups were retrieved from NCBI GenBank. Genomic DNA was isolated from healthy and green leaves. Total genomic DNA was extracted using GeneMark DNA isolation Plant Kit. The psbA-trnH region was amplified using primers psbA and trnH. DNA sequences were edited using the Sequencher 5.4.6. Sequencing data were analyzed using MEGA 6.0 software. Maximum likelihood (ML) tree was created to determine the relationships between Citrus taxa. cpDNA psbA-trnH sequences ranged between 426 and 470 nucleotides. Maximum likelihood phylogenetic tree is composed of two clades. The divergence values differed between 0.000 and 0.012. According to the results of the study, the separation of Citrus species in phylogenetic tree obtained with psbA-trnH sequence data was realized. However, it has been found that cpDNA psbA-trnH sequence populations of species belong together. In addition, the phylogenetic relationship between the sequence data of some species belonging to the Rutaceae family taken from NCBI and Citrus species was revealed.

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Section: Resultsmentioning

confidence: 86%

Sequences analysis of chloroplast psbA-trnH region in Citrus L. (Rutaceae) species from the Aegean region of Turkey

Sevindik

Canbolat

Moral

et al. 2021

Nova Biotechnol. Chim.

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“…Therefore, most researchers used cp genes or cp whole genome sequences to identify maternal parents and analyze the genetic relationship. For example, ( Nandhini et al., 2013 ) identified interspecific hybrid Coffea congensis × Coffea canephora and its parents based on the SNPs present in the rbc L and mat K. Similarly, ( Khew and Chia, 2011 ) identified the female parent of orchid hybrid Vanda Miss Joaquim using the mat K. Further, ( Uchoi et al., 2016 ) analyzed the phylogenetic relationship of 23 Citrus genotypes using rbc L and mat K genes. Chen et al.…”

Section: Discussionmentioning

confidence: 99%

Molecular identification of Bambusa changningensis is the natural bamboo hybrid of B. rigida × Dendrocalamus farinosus

Zhuo,

Vasupalli,

Wang

et al. 2023

Front. Plant Sci.

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Bamboo is one of the fastest-growing plants commonly used in food, fibre, paper, biofuel, ornamental and medicinal industries. Natural hybridization in bamboo is rare due to its long vegetative period followed by gregarious flowering and death of the entire population. In the current study, a new bamboo species, Bambusa changningensis, shows intermediate characteristics of Dendrocalamus farinosus and B. rigida morphologically, but it is unknown whether B. changningensis is a natural hybrid. Moreover, B. changningensis has been identified as a superior variety of Sichuan Province with high pulping yield, fibre length and width. Therefore, we analyzed the morphological characteristics, DNA markers, DNA barcoding and chloroplast genomes to identify the hybrid origin of B. changningensis and possible maternal parent. We have developed the transcriptomic data for B. changningensis and mined the SSR loci. The putative parental lines and hybrid were screened for 64 SSR makers and identified that SSR14, SSR28, SSR31 and SSR34 markers showed both alleles of the parental species in B. changningensis, proving heterozygosity. Sequencing nuclear gene GBSSI partial regions and phylogenetic analysis also confirm the hybrid nature of B. changningensis. Further, we have generated the complete chloroplast genome sequence (139505 bp) of B. changningensis. By analyzing the cp genomes of both parents and B. changningensis, we identified that B. rigida might be the female parent. In conclusion, our study identified that B. changningensis is a natural hybrid, providing evidence for bamboo’s natural hybridization. This is the first report on confirming a natural bamboo hybrid and its parents through SSR and chloroplast genome sequence.

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Retraction Note to: Inferring Phylogenetic Relationships of Indian Citron (Citrus medica L.) Based on rbcL and matK Sequences of Chloroplast DNA

Cited by 2 publications

References 5 publications

Sequences analysis of chloroplast psbA-trnH region in Citrus L. (Rutaceae) species from the Aegean region of Turkey

Sequences analysis of chloroplast psbA-trnH region in Citrus L. (Rutaceae) species from the Aegean region of Turkey

Molecular identification of Bambusa changningensis is the natural bamboo hybrid of B. rigida × Dendrocalamus farinosus

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