Review and Suggestions for Applying DNA Sequencing to Zooplankton Researches: from Taxonomic Approaches to Biological Interaction Analysis

Oh, Hye‐Ji; Chae, Yeon-Ji; Choi, Yerim; Ku, Doyeong; Heo, Yu-Ji; Kwak, Ihn‐Sil; Jo, HyunBin; Young-Seuk, Park; Chang, Kwang‐Hyeon; Kim, Hyun Woo

doi:10.11614/ksl.2021.54.3.156

Cited by 3 publications

(1 citation statement)

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“…However, it has the advantage of complementing the identification of species that are difficult to classify using traditional methods, such as the classification of conspecifics and siblings, and the identification of species in dormant eggs and larval stages, thereby improving resolution and efficiency, which are key issues in biodiversity monitoring [103,104]. Owing to these advantages, eDNA analyzers have been actively applied to abundance and species diversity monitoring based on zooplankton abundance.…”

Section: Application Of Edna To the Development Of Zooplankton Indicesmentioning

confidence: 99%

Current Utilization and Further Application of Zooplankton Indices for Ecosystem Health Assessment of Lake Ecosystems

Choi

Lee

et al. 2023

Sustainability

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For the sustainable use of lake ecosystem services—water resources, aquatic habitats for biodiversity conservation, and aesthetic values as waterfront space—ecosystem health assessments using biota are implemented as important national environmental monitoring projects. Zooplankton play a key role as an important linkage in the material circulation as secondary producers in lake ecosystems. At the same time, they influence the composition and biomass of other communities through biological interactions. In this review, we summarize useful zooplankton indices for ecosystem health assessment and suggest considerations for their use. Suggestions are provided for the practical application of indirectly measured zooplankton biomass, as well as the potential and limitations of eDNA application, which has recently been actively utilized in biological monitoring.

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Section: Application Of Edna To the Development Of Zooplankton Indicesmentioning

confidence: 99%

Current Utilization and Further Application of Zooplankton Indices for Ecosystem Health Assessment of Lake Ecosystems

Choi

Lee

et al. 2023

Sustainability

Self Cite

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Consideration on Application of Zooplankton Index for Wetland Ecosystem Evaluation

Kim

2024

Korean J. Ecology and Environment.

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A Comparative Analyzing of Zooplankton Community Diversity in Surface Layer Water of Reservoir Via eDNA Metabarcoding and Microscopy

Chang

et al. 2022

Diversity

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We compared two sampling methods, eDNA metabarcoding and microscope identification (MSI), for the analysis of zooplankton diversity in reservoirs with its inflow and outflow streams. The dynamic patterns of Cladocera and Rotifera at different time points were similar between the two sampling methods, but there was a slight difference in the Copepoda. Specifically, the members of the Copepoda subclass could not be easily classified using the MSI method, whereas eDNA metabarcoding could detect minor taxa of Cladocera and Rotifera. Upon comparing the list of zooplankton communities in Korea with the gene database of NCBI, only ~56% of the zooplankton genera reported in Korea could be detected based on the 18S rRNA gene. However, eDNA metabarcoding detected a more diverse range of zooplankton despite the lack of genetic information. As water temperature increased after May, the zooplankton diversity decreased according to the MSI method but increased according to the eDNA metabarcoding method. Although eDNA metabarcoding has some limitations, it was able to detect a wider diversity of zooplankton compared to the MSI. eDNA metabarcoding provides a more reliable means to identify zooplankton.

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Review and Suggestions for Applying DNA Sequencing to Zooplankton Researches: from Taxonomic Approaches to Biological Interaction Analysis

Cited by 3 publications

References 0 publications

Current Utilization and Further Application of Zooplankton Indices for Ecosystem Health Assessment of Lake Ecosystems

Current Utilization and Further Application of Zooplankton Indices for Ecosystem Health Assessment of Lake Ecosystems

Consideration on Application of Zooplankton Index for Wetland Ecosystem Evaluation

A Comparative Analyzing of Zooplankton Community Diversity in Surface Layer Water of Reservoir Via eDNA Metabarcoding and Microscopy

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