Sickle cell disease (SCD), an inherited blood disorder caused by a point mutation that renders hemoglobin susceptible to polymerization when deoxygenated, affects millions of people worldwide. Manifestations of SCD include chronic hemolytic anemia, inflammation, painful vaso-occlusive crises, multisystem organ damage, and reduced life expectancy. Part of SCD pathophysiology is the excessive formation of intracellular reactive oxygen species (ROS) in SCD red blood cells (RBCs) which accelerates their hemolysis. Normal RBC precursors eliminate their mitochondria during the terminal differentiation process. Strikingly, we observed an increased percentage of RBCs which retain mitochondria in SCD patients’ blood samples compared to healthy individuals In addition, we demonstrate that excessive levels of ROS in SCD are associated with this abnormal mitochondrial retention by an experimental SCD mouse model. Interestingly, LSD1 inhibitor RN-1 and mitophagy inducing agent mTOR inhibitor, Sirolimus, increased red blood cell lifespan and reduced ROS accumulation in parallel with reduction of mitochondria retaining RBCs in the SCD mouse model. Furthermore, gene expression analysis of SCD mice treated with RN-1 showed increased expression of mitophagy genes. Our findings suggest that reduction of mitochondria retaining RBCs may provide a new therapeutic approach to prevent excessive ROS in SCD.