Considering the ongoing development of various devices and rich applications in intelligent Internet of Things (IoT) systems, it is a crucial issue to solve secure transmission of legitimate signals for massive data sharing in the systems. Cooperative jamming-based physical layer security is explored to be a complement of conventional cryptographic schemes to protect private information. Yet, this method needs to solve a game between energy consumption and signal secure transmission. In this paper, we summarize the basics of cooperative jamming and universal security metrics. Using the metrics, we study a series of typical cooperative jamming strategies from two aspects, including power allocation and energy harvesting. Finally, we propose open issues and challenges of further works on cooperative jamming in an IoT system with energy constraints.