High-throughput RNA sequencing was used to compare expression profiles in two Arctic charr (Salvelinus alpinus) families post-seawater exposure to identify genes and biological processes involved in hypoosmoregulation and regulation of salinity tolerance. To further understand the genetic architecture of hypo-osmoregulation, the genomic organization of differentially expressed (DE) genes was also analysed. Using a de novo gill transcriptome assembly we found over 2300 contigs to be DE. Major transporters from the seawater mitochondrion-rich cell (MRC) complex were up-regulated in seawater. Expression ratios for 257 differentially expressed contigs were highly correlated between families, suggesting they are strictly regulated. Based on expression profiles and known molecular pathways we inferred that seawater exposure induced changes in methylation states and elevated peroxynitrite formation in gill. We hypothesized that concomitance between DE immune genes and the transition to a hypo-osmoregulatory state could be related to Cl -sequestration by antimicrobial defence mechanisms. Gene ontology analysis revealed that cell division genes were up-regulated, which could reflect the proliferation of ATP1α1b-type seawater MRCs. Comparative genomics analyses suggest that hypo-osmoregulation is influenced by the relative proximities among a contingent of genes on Arctic charr linkage groups AC-4 and AC-12 that exhibit homologous affinities with a region on stickleback chromosome Ga-I. This supports the hypothesis that relative gene location along a chromosome is a property of the genetic architecture of hypoosmoregulation. Evidence of non-random structure between hypoosmoregulation candidate genes was found on AC-1/11 and AC-28, suggesting that interchromosomal rearrangements played a role in the evolution of hypo-osmoregulation in Arctic charr.KEY WORDS: RNA-Seq, Gene expression, Osmoregulation, Salinity tolerance, Salmonidae, Salvelinus alpinus
INTRODUCTIONMigration between freshwater and seawater habitats is an important stage in the ontogeny of anadromous salmonids (Hoar, 1988). Freshwater and seawater impose adverse and contrasting types of osmoregulatory stress, such that maintenance of internal ion homeostasis is paramount for survival. The transition from freshwater to seawater requires osmoregulatory mechanisms to switch from a state of ion absorption (i.e. hyper-osmoregulation) to one of ion excretion (i.e. hypo-osmoregulation). Gill tissue epithelial
RESEARCH ARTICLEDepartment of Integrative Biology, University of Guelph, Guelph, ON, Canada, N1G 2W1. cells play an integral role in this process (Evans et al., 2005;Marshall and Grosell, 2006).Mitochondrion-rich cells (MRCs) form a complex with accessory cells and pavement cells in the epithelial layer of gill tissue (Evans et al., 2005;Marshall and Grosell, 2006). In seawater, this complex facilitates excretion of excess Cl -and Na + from blood to seawater. Cl -excretion is achieved via the collective function of three interdependent membrane-bound ion...