When studying an unfamiliar system, we first look for the symmetry that the system has, so that we can make many predictions about the possible properties of the system. The symmetry in ship network security needs to maintain a stable state and maintain a constant state of ship network security. With the rapid development of network information technology, smart ships have become a new hot spot in the international shipping industry. The smart ships cybersecurity discussion is also at the top of the list in the maritime field. More and more shipping companies feel that their smart ship systems need to be upgraded and the main reason behind this is that the systems are maliciously attacked by cyber hackers. Therefore, it is extremely important to detect and protect the security of intelligent ship network systems in real time. The issue of network security has always accompanied the whole process of the development of the Internet. At the same time, with the development of Internet technology, network hacking attacks against the Internet have never stopped developing, and traditional ship network security risk detection and protection cannot achieve good results. After understanding the operation mode of intelligent ship networks, this paper deeply studied the characteristics of cloud computing technology and proposed a real-time risk detection method and protection strategy for intelligent ship network security based on cloud computing. This paper mainly used multi-sensor nodes to analyze data containing malicious attack information and implemented self-execution protection strategy generation nodes to intercept and protect from the attack, so as to achieve the purpose of maintaining the network security of intelligent ships. Through experiments, the virus intrusion detection and defense rate of the algorithm proposed in this paper was able to reach 85% to 95%, while the virus intrusion detection defense rate of the traditional intelligent ship network security protection algorithm was 55% to 65%. The detection rate of the algorithm proposed in this paper was able to reach 96.95% and the false positive rate was 2.56%. The detection rate of the traditional algorithm was only 70.76%, while the false positive rate reached 4.69%. All of the proposed algorithm’s data were significantly better than that of traditional algorithms, which proved that the performance of cloud computing-based real-time risk detection and protection algorithms for intelligent ship network security was significantly better than that of traditional algorithms.