Matrix metalloproteinase-7 (MMP7) expression is quickly upregulated after injury, and functions to regulate wound repair and various mucosal immune processes. We evaluated the global transcriptional response of airway epithelial cells from wild-type and Mmp7-null mice cultured at an air-liquid interface. The analysis of differentially expressed genes between genotypes after injury revealed an enrichment of functional categories associated with inflammation, cilia, and differentiation. Because these analyses suggested that MMP7 regulated ciliated cell formation, we evaluated the recovery of the airway epithelium in wild-type and Mmp7-null mice in vivo after naphthalene injury, which revealed augmented ciliated cell formation in the absence of MMP7. Moreover, in vitro studies evaluating cell differentiation in air-liquid interface cultures also showed faster ciliated cell production under Mmp7-null conditions compared with wild-type conditions. These studies identified a new role for MMP7 in attenuating ciliated cell differentiation during wound repair.Keywords: MMP7; matrilysin; microarray; wound repair Like all epithelial surfaces, the lung epithelium has evolved to respond to the constant pressures exerted by the external environment, and is distinguished by an innate wound repair program initiated upon injury. Without such an efficient response, the body is left exposed to potential pathogenic invasion. More importantly, ineffective wound closure can lead to long-term adverse consequences such as chronic inflammatory states, fibrosis, and malignant transformations (1). Although the response to injury is essentially immediate, large wounds require time to repair. Therefore, injury is often accompanied by an inflammatory response that recruits leukocytes, which serve to scan for pathogens (2). Eventually, as wound healing nears completion, the associated inflammation resolves, returning the epithelium to a differentiated, homeostatic state.Matrix metalloproteinases (MMPs) comprise a family of 25 or more zinc-dependent proteases that cleave the extracellular matrix and cell-surface proteins to regulate wound healing and a variety of immune responses (3). In particular, MMP7 (matrilysin) plays a prominent role in the injury response of all mucosal epithelia. Expressed at low concentrations in the resting lung epithelium, MMP7 production is quickly induced in cells bordering the site of injury, stimulating cell migration and coordinating the inflammatory response (4-8).MMP7 is spatiotemporally regulated after injury by mechanisms that have yet to be fully elucidated (9). On one level, its expression is restricted to areas of injury (5, 7, 10). MMP7 is also secreted as a zymogen that must be activated apparently by an allosteric-mediated autolytic process (3, 9, 11). The complexity of this regulation is further magnified by the temporal selectivity with which MMP7 cleaves its substrates. For example, syndecan-1 is shed early after injury to facilitate cell migration and neutrophil recruitment into the lungs (4, 6), ...