SNP discovery and functional annotation in the <i>Panax japonicus</i> var. <i>major</i> transcriptome

Li, Jian; Bai, Ding-Ping; Zhang, Xifeng

doi:10.1039/c8ra09495k

Cited by 4 publications

(1 citation statement)

References 21 publications

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“…bipinnatifidus (also known as Panax japonicas var. major (Burkill) C.Y.Wu and Feng bipinnatifidus ) is a perennial herb mainly distributed in China ( Li et al, 2019 ). The root of P. bipinnatifidus , known as Zhuzi (means bead due to its appearance) ginseng locally , has been used as traditional medicine for thousands of years in Qinling Mountains, China.…”

Section: Discussionmentioning

confidence: 99%

Diversity and Ginsenoside Biotransformation Potential of Cultivable Endophytic Fungi Associated With Panax bipinnatifidus var. bipinnatifidus in Qinling Mountains, China

Shi

et al. 2022

Front. Pharmacol.

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To obtain novel fungi with potent β-glucosidase for minor ginsenoside production, Panax bipinnatifidus var. bipinnatifidus, which is a traditional medicinal plant containing various ginsenosides, was first employed to isolate endophytic fungi in this study. A total of 93 representative morphotype strains were isolated and identified according to ITS rDNA sequence analyses, and they were grouped into three phyla (Ascomycota, Basidiomycota, and Mucoromycota), five classes (Dothideomycetes, Sordariomycetes, Eurotiomycetes, Agaricomycetes, and Mucoromycetes), and 24 genera. Plectosphaerella (RA, 19.35%) was the most abundant genus, followed by Paraphoma (RA, 11.83%) and Fusarium (RA, 9.70%). The species richness index (S, 34) and the Shannon–Wiener index (H’, 3.004) indicated that P. bipinnatifidus harbored abundant fungal resources. A total of 26 endophytic fungal ethyl acetate extracts exhibited inhibitory activities against at least one pathogenic bacterium or fungus. In total, 11 strains showed strong β-glucosidase activities and also presented with the ability of ginsenoside biotransformation with varied glycoside-hydrolyzing pathways. Excitingly, three genera, namely, Ilyonectria, Sarocladium, and Lecanicillium, and all 11 taxa were first found to have the ability to transform ginsenosides in our study. The results indicated that P. bipinnatifidus could be a new fungi resource with potential novel natural compounds with antimicrobial activity and potent β-glucosidase for varied minor ginsenoside production.

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Section: Discussionmentioning

confidence: 99%

Diversity and Ginsenoside Biotransformation Potential of Cultivable Endophytic Fungi Associated With Panax bipinnatifidus var. bipinnatifidus in Qinling Mountains, China

Shi

et al. 2022

Front. Pharmacol.

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Single nucleotide polymorphism discovery and functional annotation analysis of blackberry fruit

Zhang

Yang

et al. 2022

Trees

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Using next-generation sequencing approach for discovery and characterization of plant molecular markers

Panahi,

Mohammadzadeh Jalaly,

Hamid

2024

Current Plant Biology

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SNP discovery and functional annotation in the Panax japonicus var. major transcriptome

Abstract: Due to the lack of a Panax japonicus var. major reference genome, we assembled a reference transcriptome from P. japonicus C. A. Mey transcriptome sequencing data, and 203 283 unigenes were obtained.

Cited by 4 publications

References 21 publications

Diversity and Ginsenoside Biotransformation Potential of Cultivable Endophytic Fungi Associated With Panax bipinnatifidus var. bipinnatifidus in Qinling Mountains, China

Diversity and Ginsenoside Biotransformation Potential of Cultivable Endophytic Fungi Associated With Panax bipinnatifidus var. bipinnatifidus in Qinling Mountains, China

Single nucleotide polymorphism discovery and functional annotation analysis of blackberry fruit

Using next-generation sequencing approach for discovery and characterization of plant molecular markers

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