The relationship between metal levels in the Olt River ecosystem in southern Romania (measured during 2018‒2019, with 1064 sediment and water samples) and daily climate data were explored to assess the need for targeted source identification and mitigation strategies. In 2018, there was a strong relationship between the sediment Pb, As, Cd, and Hg contents and temperature (r > 0.8, p < 0.001). Mercury in sediments had a positive correlation with precipitation, and Hg in the water correlated with minimum temperature in May 2018 (p < 0.01). In July 2019, heavy metals were positively correlated with precipitation and negatively correlated with temperature. According to nonsymmetrical correspondence analysis, the four climate parameters analyzed were linearly correlated with the frequency of metal detection (p < 0.001) in both years. The statistical analysis showed strong relationships between heavy metal levels and climatic factors and attributed the discrepancies in elemental concentrations between 2018 and 2019 to climate warming.