The water pollution caused by the release of organic pollutants has attracted remarkable attention, and solutions for wastewater treatment are being developed. In particular, the photocatalytic removal of organic pollutants in water systems is a promising strategy to realize the self-cleaning of ecosystems under solar light irradiation. However, at present the semiconductor-based nanocatalysts can barely satisfy the industrial requirements because their wide bandgaps restrict the effective absorption of solar light, which needs an energy band modification to boost the visible light harvesting via surface engineering. As an innovative approach, pulsed laser heating in liquids has been utilized to fabricate the nanomaterials in catalysis; it demonstrates multi-controllable features, such as size, morphology, crystal structure, and even optical or electrical properties, with which photocatalytic performances can be precisely optimized. In this review, focusing on the powerful heating effect of pulsed laser irradiation in liquids, the functional nanomaterials fabricated by laser technology and their applications in the catalytic degradation of various organic pollutants are summarized. This review not only highlights the innovative works of pulsed laser-prepared nanomaterials for organic pollutant removal in water systems, such as the photocatalytic degradation of organic dyes and the catalytic reduction of toxic nitrophenol and nitrobenzene, it also critically discusses the specific challenges and outlooks of this field, including the weakness of the produced yields and the relevant automatic strategies for massive production.