2022
DOI: 10.1101/2022.10.26.512711
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Stochastic Spatiotemporal Simulation of a General Reaction System

Abstract: Biological systems frequently contain biochemical species present as small numbers of slowly diffusing molecules, leading to fluctuations that invalidate deterministic analyses of system dynamics. The development of mathematical tools that account for the spatial distribution and discrete number of reacting molecules is vital for understanding cellular behavior and engineering biological circuits. Here we present an algorithm for an event-driven stochastic spatiotemporal simulation of a general reaction proces… Show more

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