High-dimensional quantum resources provide the ability to encode several bits of information on a single photon, which can particularly increase the secret key rate rate of quantum key distribution (QKD) systems. Recently, a practical four-dimensional QKD scheme based on time-bin quantum photonic state, only with two single-photon avalanche detectors as measurement setup, has been proven to have a superior performance than the qubit-based one. In this paper, we extend the results to our proposed eight-dimensional scheme. Then, we consider two main practical factors to improve its secret key bound. Concretely, we take the afterpulse effect into account and apply a finite-key analysis with the intensity fluctuations. Our secret bounds give consideration to both the intensity fluctuations and the afterpulse effect for the high-dimensional QKD systems. Numerical simulations show the bound of eight-dimensional QKD scheme is more robust to the intensity fluctuations but more sensitive to the afterpulse effect than the four-dimensional one.