35Divergence among duplicate genes is one of the important sources of evolutionary 36 innovation. But, the contribution of duplicate divergence to variation in Arabidopsis 37 accessions is sparsely known. Recently, we studied the role of a cell wall localized protein, 38 ZERZAUST (ZET), in Landsberg erecta (Ler) accession. Here, we present the study of ZET 39 in Columbia (Col) accession, which not only showed differential expression patterns in 40 comparison to Ler, but also revealed its close homolog, ZERZAUST HOMOLOG (ZETH). 41 Although, genetic analysis implied redundancy, expression analysis revealed divergence, 42 with ZETH showing minimal expression in both Col and Ler. In addition, ZETH shows 43 relatively higher expression levels in Col compared to Ler. Our data also reveal 44 compensatory up-regulation of ZETH in Col, but not in Ler, implying it is perhaps 45 dispensable in Ler. However, a novel CRISPR/Cas9-induced zeth allele confirmed that ZETH 46 has residual activity in Ler. The results provide genetic evidence for accession-specific 47 differences in compensation mechanism and asymmetric gene contribution. Thus, our work 48 reveals a novel example for how weakly expressed homologs contribute to diversity among 49 accessions. 50 51 52 How genetic variation translates into phenotypic variation is of immense scientific interest 53 (Weigel 2012). Among others, gene duplication followed by functional divergence is an 54 important source of evolutionary complexity and innovation in multicellular organisms 55 (Ohno 1970; Lynch and Conery 2000; Lynch and Katju 2004). Many gene pairs after 56 duplication revert to single gene state but the ones that sustained undergo functionalization. 57 The Arabidopsis genome underwent several duplication events which resulted in large 58 number of homologous genes and regions across the genome (Blanc and Wolfe 2004; 59 Ambrosino et al. 2016; Panchy et al. 2016). The functional importance of homologs has been 60 demonstrated in various aspects of plant signaling and metabolism (Briggs et al. 2006). But, 61 whether and how the differentiation in duplicate gene expression contributes to accession 62 variation in Arabidopsis is not known. 63 64 Studies have shown that divergence of many duplicate genes occurs by expression divergence 65 among and within species (Gu et al. 2004; Li et al. 2005). This phenomenon expands gene 66 regulatory networks and contributes to physiological and morphological diversity (Carroll 67 2000; Lynch and Conery 2000; Gu et al. 2004; Rensing 2014). In Arabidopsis, about two-68 thirds of duplicates were shown to exhibit expression divergence (Haberer et al. 2004). An 69 evolutionary study on gene duplication revealed that duplicate genes show a high degree of 70 variance in expression within species and suggested that this variation partly depends upon 71 the biological function of the gene involved (Kliebenstein 2008). Another study also found 72 high variance of duplicated gene expression between closely related A. thaliana and A. 73 arenosa...