The complete chloroplast genome sequence of Codonopsis minima (Campanulaceae), an endemic to Korea

Cheon, Kyeong‐Sik; Kim, Kyung-Ah; Han, Jun-Soo; Yoo, Ki-Oug

doi:10.1007/s12686-017-0718-0

Cited by 4 publications

(9 citation statements)

References 8 publications

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“…The whole plastome sequences of 18 species from the Campanulaceae family were used for phylogenetic analysis, including Adenophora divaricate (NC_036221.1) [ 41 ], Adenophora stricta (NC_036223.1) [ 41 ], Adenophora triphylla (NC_040857.1) [ 42 ], Campanula punctata (NC_033337.1) [ 43 ], Campanula takesimana (KP006497.1) [ 44 ], Campanula zangezura (NC_057269.1) [ 45 ], Codonopsis lanceolata (MH018574.1) [ 27 ], Codonopsis minima (NC_036311.1) [ 28 ], Codonopsis tsinlingensis (NC_056284.1) [ 29 ], Cyphia angustiloba (NC_036086.1) [ 19 ], Cyphia banksiana (NC_036087.1) [ 19 ], Cyphia belfastica (NC_036088.1) [ 19 ], Leptocodon hirsutus (NC_049093.1) [ 46 ], Lobelia chinensis (NC_035370.1) [ 47 ], Lobelia erinus (NC_036098.1) [ 19 ], Lobelia galpinii (NC_036071.1) [ 19 ], Carpodetus serratus (NC_036084.1) [ 19 ]. Carpodetus serratus was selected as the outgroup.…”

Section: Methodsmentioning

confidence: 99%

“…We created Dot plots of the plastome sequences of tangshen and Arabidopsis thaliana (NC_000932.1) [ 54 ], C. lanceolata (MH018574.1) [ 27 ], C . minima (NC_036311.1) [ 28 ] and C . tsinlingensis (NC_056284.1) [ 29 ], respectively, to identify possible structure variation using the Gepard software [ 55 ].…”

Section: Methodsmentioning

confidence: 99%

“…Among the 42 Codonopsis species, the complete plastomes of only three species have been published, including Codonopsis lanceolata (MH018574.1) [ 27 ] and Codonopsis minima (NC_036311.1) [ 28 ], and Codonopsis tsinlingensis (MN122102.1) [ 29 ]. In the current study, we sequenced the complete plastomes of Codonopsis pilosula subsp.…”

Section: Introductionmentioning

confidence: 99%

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Characterization of Codonopsis pilosula subsp. tangshen plastome and comparative analysis of Codonopsis species

Yue

Jiang

et al. 2022

PLoS ONE

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Codonopsis pilosula subsp. tangshen is one of the most important medicinal herbs used in traditional Chinese medicine. Correct identification of materials from C. pilosula subsp. tangshen is critical to ensure the efficacy and safety of the associated medicines. Traditional DNA molecular markers could distinguish Codonopsis species well, so we need to develop super or specific molecular markers. In this study, we reported the plastome of Codonopsis pilosula subsp. tangshen (Oliv.) D.Y. Hong conducted phylogenomic and comparative analyses in the Codonopsis genus for the first time. The entire length of the Codonopsis pilosula subsp. tangshen plastome was 170,672 bp. There were 108 genes in the plastome, including 76 protein-coding genes, 28 transfer RNA (tRNA), and four ribosomal RNA (rRNA) genes. Comparative analysis indicated that Codonopsis pilosula subsp. tangshen had an unusual large inversion in the large single-copy (LSC) region compared with the other three Codonopsis species. And there were two dispersed repeat sequences at both ends of the inverted regions, which might mediate the generation of this inversion. We found five hypervariable regions among the four Codonopsis species. PCR amplification and Sanger sequencing experiments demonstrated that two hypervariable regions could distinguish three medicinal Codonopsis species. Results obtained from this study will support taxonomic classification, discrimination, and molecular evolutionary studies of Codonopsis species.

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Section: Methodsmentioning

confidence: 99%

Section: Methodsmentioning

confidence: 99%

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Characterization of Codonopsis pilosula subsp. tangshen plastome and comparative analysis of Codonopsis species

Yue

Jiang

et al. 2022

PLoS ONE

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“…Endemic species are important for understanding speciation mechanisms and biogeographic history in a certain geographical region because the distribution of species is closely related to their evolutionary history (Cox and Moore 2010). Many studies have been recently conducted to identify the characteristics of chloroplast (cp) genome and develop useful molecular markers in order to determine speciation patterns and genetic diversity for endemic species (Cheon et al 2017;Kim et al 2019).…”

mentioning

confidence: 99%

“…Many studies have been recently conducted to identify the characteristics of chloroplast (cp) genome and develop useful molecular markers in order to determine speciation patterns and genetic diversity for endemic species (Cheon et al. 2017 ; Kim et al. 2019 ).…”

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confidence: 99%

Characterization of the complete chloroplast genome of Korean endemic, Habenaria cruciformis (Orchidaceae)

Kim

Khoa

Jung

et al. 2020

Mitochondrial DNA Part B

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Habenaria cruciformis (Orchidaceae), endemic to South Korea, is a perennial herb and its local population sizes are declined because of the destruction caused by human activity and the invasion of exotic species in their habitats. Here, we report the complete chloroplast (cp) genome sequence of H. cruciformis, which will provide valuable information for its biological conservation and future studies for the cp genome evolution of endemic plants on the Korean Peninsula. The cp genome of H. cruciformis is 155,708 bp in length, containing a large single-copy region of 85,131 bp and a small single-copy region of 17,659 bp which are separated by a pair of inverted repeats of 26,459 bp. The H. cruciformis cp genome encodes 131 genes, of which 113 are unique, including 79 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The overall GC content is 36.6%, which is consistent with the Habenaria species previously reported. Our phylogenomic analyses identified the sister relationship between H. cruciformis and H. linearfolia in the genus.

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Plastome sequencing of Myripnois dioica and comparison within Asteraceae

et al. 2019

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The complete chloroplast genome sequence of Codonopsis minima (Campanulaceae), an endemic to Korea

Cited by 4 publications

References 8 publications

Characterization of Codonopsis pilosula subsp. tangshen plastome and comparative analysis of Codonopsis species

Characterization of Codonopsis pilosula subsp. tangshen plastome and comparative analysis of Codonopsis species

Characterization of the complete chloroplast genome of Korean endemic, Habenaria cruciformis (Orchidaceae)

Plastome sequencing of Myripnois dioica and comparison within Asteraceae

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