The complete chloroplast genome sequence of <i>Smilax microphylla</i> C. H. Wright

Wang, Feng; Liang, Daqu; Yang, Jingyi

doi:10.1080/23802359.2021.1947914

Cited by 2 publications

(2 citation statements)

References 9 publications

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“… 2022 ), S. microphylla NC_056390 (Wu et al. 2021 ), S. weniae NC_067604 (Feng et al. 2022 ), S. nipponica NC_049024, S. riparia OL351263, S. glabra MZ442610, S. glycophylla NC_049023 (Do et al.…”

Section: Resultsmentioning

confidence: 99%

Complete chloroplast genome of Tricyrtis xianjuensis Li, Chen & Ma 2014 (Liliaceae): a species endemic to Zhejiang province, China

Huang,

Lu,

Wang

et al. 2024

Mitochondrial DNA Part B

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Tricyrtis xianjuensis Li, Chen & Ma 2014 is a rare and endangered species endemic to Zhejiang province, with fewer than 200 individuals in the wild. In our present study, the complete chloroplast genome of T. xianjuensis was assembled by using high-throughput sequencing data, and its genomic features were described and comparative genomic analyses within Liliaceae family were performed. The complete chloroplast genome of T. xianjuensis was 155,748 bp in length, exhibiting a GC content of 37.3%. This genome structure contained two inverted repeats (IRs), as well as a small single-copy (SSC) and a large single-copy (LSC) region. The IR region measured 26,371 bp, while the SSC and LSC regions were 17,729 bp and 85,277 bp in length, respectively. A total of 137 genes were identified, including 85 protein-coding genes, 38 tRNA genes, eight rRNA genes, and six pseudogenes. Phylogenic analysis revealed T. xianjuensis shared a clade with T. formosana Baker 1879 and T. macropoda Miq. 1867, with a support rate of 100%. The assembly and analysis of T. xianjuensis chloroplast genome provided an insight into further studies on the conservation genetics of this endangered species.

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Section: Resultsmentioning

confidence: 99%

Complete chloroplast genome of Tricyrtis xianjuensis Li, Chen & Ma 2014 (Liliaceae): a species endemic to Zhejiang province, China

Huang,

Lu,

Wang

et al. 2024

Mitochondrial DNA Part B

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“…(NC_049023 = MT261169) and Smilax nipponica Miq. (NC_049024 = MT261170) in 2020 [ 39 ], Smilax microphylla C. H. Wright (NC_056390 = MW423607) [ 40 ] and S. glabra (NC_058534 = MZ566572) [ 41 ] in 2021, and Smilax scobinicaulis C. H. Wright (OL693684) [ 42 ] in 2022.…”

Section: Introductionmentioning

confidence: 99%

The Complete Chloroplast Genomes of Nine Smilacaceae Species from Hong Kong: Inferring Infra- and Inter-Familial Phylogeny

Wong

Siu

Tsang

et al. 2023

IJMS

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The Smilacaceae is a cosmopolitan family consisting of 200–370 described species. The family includes two widely accepted genera, namely Smilax and Heterosmilax. Among them, the taxonomical status of Heterosmilax has been continuously challenged. Seven Smilax and two Heterosmilax species can be found in Hong Kong, with most of them having medicinal importance. This study aims to revisit the infra-familial and inter-familial relationships of the Smilacaceae using complete chloroplast genomes. The chloroplast genomes of the nine Smilacaceae species from Hong Kong were assembled and annotated, which had sizes of 157,885 bp to 159,007 bp; each of them was identically annotated for 132 genes, including 86 protein-coding genes, 38 transfer RNA genes, and 8 ribosomal RNA genes. The generic status of Heterosmilax was not supported because it was nested within the Smilax clade in the phylogenetic trees, echoing previous molecular and morphological studies. We suggest delimitating the genus Heterosmilax as a section under the genus Smilax. The results of phylogenomic analysis support the monophyly of Smilacaceae and the exclusion of Ripogonum from the family. This study contributes to the systematics and taxonomy of monocotyledons, authentication of medicinal Smilacaceae, and conservation of plant diversity.

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The complete chloroplast genome sequence of Smilax microphylla C. H. Wright

Cited by 2 publications

References 9 publications

Complete chloroplast genome of Tricyrtis xianjuensis Li, Chen & Ma 2014 (Liliaceae): a species endemic to Zhejiang province, China

Complete chloroplast genome of Tricyrtis xianjuensis Li, Chen & Ma 2014 (Liliaceae): a species endemic to Zhejiang province, China

The Complete Chloroplast Genomes of Nine Smilacaceae Species from Hong Kong: Inferring Infra- and Inter-Familial Phylogeny

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