The development of a validated real-time (TaqMan) PCR for detection of Stagonosporopsis andigena and S. crystalliniformis in infected leaves of potato and tomato

Gruyter, J. de; Gent-Pelzer, M.P.E. van; Woudenberg, J.H.C.; Rijswick, Patricia C. J. van; Meekes, E.T.M.; Crous, Pedro W.; Bonants, P.J.M.

doi:10.1007/s10658-012-9990-8

Cited by 11 publications

(20 citation statements)

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“…The phylogeny of combined sequences of large subunit nrDNA (LSU), the internal transcribed spacers and the 5.8 S nrRNA (ITS), and β-tubulin regions resulted in the recognition of 19 species . Phylogenies based on the partial actin (ACT) sequence were later found to be congruent with the LSU-ITS-β-tubulin phylogeny (de Gruyter et al 2012;Vaghefi et al 2012). A four-marker phylogeny of the Stagonosporopsis spp.…”

Section: Molecular Phylogenymentioning

confidence: 91%

“…Few phylogenetic analyses of Stagonosporopsis species are available (Pethybridge et al 2004;Aveskamp et al 2010;de Gruyter et al 2012;Vaghefi et al 2012Vaghefi et al , 2014, with the most comprehensive analysis being the three-marker phylogeny performed by Aveskamp et al (2010). The phylogeny of combined sequences of large subunit nrDNA (LSU), the internal transcribed spacers and the 5.8 S nrRNA (ITS), and β-tubulin regions resulted in the recognition of 19 species .…”

Section: Molecular Phylogenymentioning

confidence: 99%

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One stop shop: backbones trees for important phytopathogenic genera: I (2014)

et al. 2014

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Many fungi are pathogenic on plants and cause significant damage in agriculture and forestry. They are also part of the natural ecosystem and may play a role in regulating plant numbers/density. Morphological identification and analysis of plant pathogenic fungi, while important, is often hampered by the scarcity of discriminatory taxonomic characters and the endophytic or inconspicuous nature of these fungi. Molecular (DNA sequence) data for plant pathogenic fungi have emerged as key information for diagnostic and classification studies, although hampered in part by non-standard laboratory practices and analytical methods. To facilitate current and future research, this study provides phylogenetic synopses for 25 groups of plant pathogenic fungi in the Ascomycota, Basidiomycota, Mucormycotina (Fungi), and Oomycota, using recent molecular data, up-to-date names, and the latest taxonomic insights. Lineagespecific laboratory protocols together with advice on their application, as well as general observations, are also provided. We hope to maintain updated backbone trees of these fungal lineages over time and to publish them jointly as new data emerge. Researchers of plant pathogenic fungi not covered by the present study are invited to join this future effort. Bipolaris, Botryosphaeriaceae,

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Section: Molecular Phylogenymentioning

confidence: 91%

Section: Molecular Phylogenymentioning

confidence: 99%

One stop shop: backbones trees for important phytopathogenic genera: I (2014)

et al. 2014

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“…OTU3406 was the most abundant indicator species in the control samples with a relative abundance of 8.42%, and was most closely related to Stagonosporopsis crystalliniformis CBS 713.85, which is a foliage pathogen of potatoes (Solanum tuberosum) and tomatoes (S. lycopersicum), causing 'black potato blight' and 'carate' on tomatoes (de Gruyter et al, 2012).…”

Section: Indicator Species By Treatment Typementioning

confidence: 99%

Fungal community composition in soils subjected to long‐term chemical fertilization is most influenced by the type of organic matter

Sun

Dsouza

Gilbert

et al. 2016

Environmental Microbiology

217

113

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Organic matter application is a widely used practice to increase soil carbon content and maintain soil fertility. However, little is known about the effect of different types of organic matter, or the input of exogenous species from these materials, on soil fungal communities. In this study, fungal community composition was characterized from soils amended with three types of organic matter over a 30-year fertilization experiment. Chemical fertilization significantly changed soil fungal community composition and structure, which was exacerbated by the addition of organic matter, with the direction of change influenced by the type of organic matter used. The addition of organic matter significantly increased soil fungal richness, with the greatest richness achieved in soils amended with pig manure. Importantly, following addition of cow and pig manure, fungal taxa associated with these materials could be found in the soil, suggesting that these exogenous species can augment soil fungal composition. Moreover, the addition of organic matter decreased the relative abundance of potential pathogenic fungi. Overall, these results indicate that organic matter addition influences the composition and structure of soil fungal communities in predictable ways.

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“…The genus Stagonosporopsis from Didymellaceae ( de Gruyter et al 2009 ) includes several economically important plant pathogens such as S. cucurbitacearum (syn. Didymella bryoniae ), the cause of gummy blight of cucurbits, and S. andigena and S. crystalliniformis ; destructive quarantine pathogens of potato and tomato, respectively ( Aveskamp et al 2010 , de Gruyter et al 2012 ). Stagonosporopsis tanaceti (formerly known as Phoma ligulicola var.…”

mentioning

confidence: 99%

Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata

et al. 2015

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The genomes of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygami, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata are presented in this genome announcement. These seven genomes are from endophytes, plant pathogens and economically important fungal species. The genome sizes range from 26.6 Mb in the case of Leptographium lundbergii to 44 Mb for Chrysoporthe austroafricana. The availability of these genome data will provide opportunities to resolve longstanding questions regarding the taxonomy of species in these genera, and may contribute to our understanding of the lifestyles through comparative studies with closely related organisms.

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The development of a validated real-time (TaqMan) PCR for detection of Stagonosporopsis andigena and S. crystalliniformis in infected leaves of potato and tomato

Cited by 11 publications

References 25 publications

One stop shop: backbones trees for important phytopathogenic genera: I (2014)

One stop shop: backbones trees for important phytopathogenic genera: I (2014)

Fungal community composition in soils subjected to long‐term chemical fertilization is most influenced by the type of organic matter

Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata

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