Genetic variation in mitochondrial have chosen an evolutionary setting (a DNA (mtDNA) has been studied in pop-local subspecies hybrid swarm) which ulations of mammals, Drosophila, and a should facilitate analysis of several posfew other higher animals (reviews in Av-sible features of mtDNA variation. Disise and Lansman, 1983;Brown, 1983). tinctive mtDNA genotypes contributed Among the noteworthy features of by the parental subspecies to the hybrid mtDNA variability pertinent to the anal-swarm are identified. As described later, ysis of evolutionary process are the fol-these provide a special opportunity to lowing: a rapid rate of evolution involv-recognize paternally-generated mtDNA ing primarily base substitutions plus very heteroplasmicity, if it does exist, both in small addition/deletions (Brown et al., somatic and germ cells. Study of the as-1979; Cann and Wilson, 1983); a re-sociation between allozyme and mtDNA markable stability of gene content and markers permits comparison of the evoarrangement; apparent mtDNA se-lutionary consequences ofbiparental verquence homogeneity (homoplasmicity) sus uniparental transmission of genoin somatic cells within an individual or-types across animal generations. We will ganism; extensive sequence polymor-also include a description of mtDNA sephism among con specifics; and maternal quence variation across a broader range transmission ofmtDNA to progeny. Em-of the species. At this macrogeographic pirical and conceptual reservations apply level, is the evolutionary divergence in to some of these generalities. For ex-mtDNA, reflecting matriarchal phylogample, low frequency mtDNA variants eny, concordant with the subspecies diswithin an individual would normally es-tributions defined by morphology and by cape empirical detection, and, given the allozymes encoded in the nuclear geubiquity of between-individual sequence nome? differences, it would seem that at least MATERIALS AND METHODS some transient mtDNA heteroplasmicity (perhaps in germ cell lineages) is ineviTaxa Examined table (see Olivo et al., 1983). Also, the Two subspecies of bluegill, originally consequential possibility remains that described by morphologic criteria, are some mtDNA molecules are successfully native to the southeastern United States transmitted to progeny from the male (Hubbs and Allen, 1944; Miller and parent (paternal leakage; but see Lans-Winn, 1951). Lepomis macrochirus purman et al., 1983).purescens, abundant in peninsular FlorThe main purpose of this study is to ida and Atlantic coastal streams, differs begin the characterization of mtDNA slightly in quantitative morphologic and polymorphism in another class of ver-physiologic features from L. m. macrotebrates-the fishes. Our approach has chirus, the bluegill inhabiting the Missisbeen to map mtDNA restriction site vari-sippi and other Gulfdrainages east to the ation in the bluegill sunfish (Lepomis Chattahoochee River in Georgia (Hubbs macrochirus;Centrarchidae), using a large and Lagler, 1958). A recent protein-elecnumber of restriction endo...