2014
DOI: 10.1186/1471-2164-15-219
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Transcriptome sequencing and profiling of expressed genes in cambial zone and differentiating xylem of Japanese cedar (Cryptomeria japonica)

Abstract: BackgroundForest trees have ecological and economic importance, and Japanese cedar has highly valued wood attributes. Thus, studies of molecular aspects of wood formation offer practical information that may be used for screening and forward genetics approaches to improving wood quality.ResultsAfter identifying expressed sequence tags in Japanese cedar tissue undergoing xylogenesis, we designed a custom cDNA microarray to compare expression of highly regulated genes throughout a growing season. This led to ide… Show more

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Cited by 53 publications
(56 citation statements)
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References 109 publications
(115 reference statements)
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“…For example, a putative sucrose phosphate synthase gene is included in cluster 5, as well as genes coding for expansins and genes involved in hemicelluloses (mainly xyloglucans) biosynthesis were included in cluster 2. This is consistent with the induction of (Mishima et al 2014). In the same way, a CesA-like gene and several genes putatively coding for CAZymes, such as XET-like proteins, are present in cluster 4.…”
Section: Degs Involved In Lw Developmentsupporting
confidence: 90%
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“…For example, a putative sucrose phosphate synthase gene is included in cluster 5, as well as genes coding for expansins and genes involved in hemicelluloses (mainly xyloglucans) biosynthesis were included in cluster 2. This is consistent with the induction of (Mishima et al 2014). In the same way, a CesA-like gene and several genes putatively coding for CAZymes, such as XET-like proteins, are present in cluster 4.…”
Section: Degs Involved In Lw Developmentsupporting
confidence: 90%
“…The presence of stress-related genes in the LW clusters is consistent with the results of Mishima et al (2014), who described the abundance of "defense mechanism genes" in the "cessation of growth clusters" obtained for the cambial zone and differentiating xylem in Cryptomeria japonica (Thunb. ex L.f.) D. Don.…”
Section: Degs Involved In Lw Developmentsupporting
confidence: 89%
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“…To assess the genes involved in lignin synthesis, we quantified the transcript abundance of eight genes: phenylalanine ammonium lyase (PAL), cinnamate 4-hydroxylase (C4H), 4-coumarate coenzyme A ligase (4CL), p-hydroxycinnamoyl-CoA: quinate/shikimate-hydroxy cinnamoyltransferase (HCT), p-coumarate 3-hydroxylase (C3H), caffeoyl-CoA O-methyltransferase (CCoAOMT), cinnamoyl-CoA reductase (CCR), and cinnamyl alcohol dehydrogenase (CAD). We followed the protocol used by Mishima et al [16] to generate the primer sequences for these genes. To assess genes involved in hemicellulose synthesis, we quantified the transcript abundances of two genes required for glucomannan and xylan synthesis.…”
Section: Genes Examined and Primer Synthesismentioning
confidence: 99%
“…Numerous studies have largely focused on the regulation of vascular cambium activity in relation to seasonal cycles (Baba et al, 2011), and genetic networks responsible for stem cell maintenance (Elo et al, 2009;Miyashima et al, 2013). Several studies have also reported that gene expression profiling in the vascular cambium of aspen (Zhong et al, 2010), Eucalyptus (Pavy et al, 2005), Cryptomeria japonica (Mishima et al, 2014), and Populus trichocarpa (Dharmawardhana et al, 2010). Moreover, the sensitivity of cambium to plant hormones is essential for cambium activity and the dynamic mechanism of wood formation (Matsumoto-Kitano et al, 2008;Sorce et al, 2013;Ursache et al, 2013;Wareing, 1958).…”
Section: Introductionmentioning
confidence: 99%