2021
DOI: 10.20944/preprints202111.0533.v1
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Unlocking the Complete Chloroplast Genome of a Native Tree Species from the Amazon Basin, Capirona (Calycophyllum spruceanum Benth., Rubiaceae), and Its Comparative Analysis with Other Ixoroideae Species

Abstract: Capirona (Calycophyllum spruceanum Benth.) belongs to subfamily Ixoroideae, one of de major lineages in the Rubiaceae family, and is an important timber tree, with origin in the Amazon Basin and has widespread distribution in Bolivia, Peru, Colombia, and Brazil. In this study, we obtained the first complete chloroplast (cp) genome of capirona from department of Madre de Dios located in the Peruvian Amazon. High-quality genomic DNA was used to construct librar-ies. Pair-end clean reads were obtained by PE 150 l… Show more

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“…Regarding other forest species, NGS application in not widely used yet (González, 2015;Durán, 2017). Therefore, the next step is to develop additional molecular tools for ulcumano using NGS approaches, same as the process currently conducted for capirona (Saldaña et al, 2022). In addition, we plan to conduct a de novo transcriptome study to identify EST-SSR markers to benefit the establishment of a modern breeding program of ulcumano.…”
Section: Discussionmentioning
confidence: 99%
“…Regarding other forest species, NGS application in not widely used yet (González, 2015;Durán, 2017). Therefore, the next step is to develop additional molecular tools for ulcumano using NGS approaches, same as the process currently conducted for capirona (Saldaña et al, 2022). In addition, we plan to conduct a de novo transcriptome study to identify EST-SSR markers to benefit the establishment of a modern breeding program of ulcumano.…”
Section: Discussionmentioning
confidence: 99%