2022
DOI: 10.1101/2022.12.09.519772
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Vimo: Visual Analysis of Neuronal Connectivity Motifs

Abstract: Recent advances in high-resolution connectomics provide researchers access to accurate reconstructions of vast neuronal circuits and brain networks for the first time. Neuroscientists anticipate analyzing these networks to gain a better understanding of information processing in the brain. In particular, scientists are interested in identifying specific network motifs, i.e., repeating subgraphs of the larger brain network that are believed to be neuronal building blocks. To analyze these motifs, it is crucial … Show more

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Cited by 3 publications
(2 citation statements)
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References 59 publications
(88 reference statements)
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“…For instance, NeuPrint 32 provides analysis of data after it has been proofread in NeuTu and can, in theory, also use exports and materialized snapshots from CAVE. While the reliance on static data is limiting for their use during proofreading, such tools can provide more complex analyses, such as graph queries, through preprocessing of the synapse graph 65 , as illustrated by NeuPrint 32 (https://neuprint.janelia.org), Codex and FlyBrainLab 66 .…”
Section: Discussionmentioning
confidence: 99%

CAVE: Connectome Annotation Versioning Engine

Dorkenwald,
Schneider-Mizell,
Brittain
et al. 2023
Preprint
Self Cite
“…For instance, NeuPrint 32 provides analysis of data after it has been proofread in NeuTu and can, in theory, also use exports and materialized snapshots from CAVE. While the reliance on static data is limiting for their use during proofreading, such tools can provide more complex analyses, such as graph queries, through preprocessing of the synapse graph 65 , as illustrated by NeuPrint 32 (https://neuprint.janelia.org), Codex and FlyBrainLab 66 .…”
Section: Discussionmentioning
confidence: 99%

CAVE: Connectome Annotation Versioning Engine

Dorkenwald,
Schneider-Mizell,
Brittain
et al. 2023
Preprint
Self Cite
“…There remains, 670 of course, a space of larger network motifs to explore. We have 671 integrated the network motif search and visualization tool Vimo 672 (76) into Codex, which allows users to query the Flywire con-673 nectome for any network motif of interest.…”
mentioning
confidence: 99%