Multi-scale coherent structures have been observed in ocean currents, which are induced by the interaction of shear flows with different velocities. Understanding the spatial configuration and scale characteristics of coherent structures will promote the explanation of physical ocean phenomena. Considering the self-similarity, we propose a spatial correlation identification model for coherent structure extraction and three-dimensional visualization based on the wavelet transform and time-dependent intrinsic correlation method. The spatial and scale distributions of coherent structures are related to the dissipation rate variation. Most large-scale coherent structures, with the largest length scale of 13 m, are found to exist in stable fluid, such as the water column below 50 m. However, small-scale structures are found in chaotic fluids, such as the upper layer. Furthermore, we found that coherent structures of different scales coexist simultaneously in the same depth range, indicating a simultaneous multi-scale structure pattern for turbulent flow investigations.