House sparrows () are a hugely successful anthrodependent species; occurring on nearly every continent. Yet, despite their ubiquity and familiarity to humans, surprisingly little is known about their origins. We sought to investigate the evolutionary history of the house sparrow and identify the processes involved in its transition to a human-commensal niche. We used a whole genome resequencing dataset of 120 individuals from three Eurasian species, including three populations of Bactrianus sparrows, a non-commensal, divergent house sparrow lineage occurring in the Near East. Coalescent modelling supports a split between house and Bactrianus sparrow 11 Kya and an expansion in the house sparrow at 6 Kya, consistent with the spread of agriculture following the Neolithic revolution. Commensal house sparrows therefore likely moved into Europe with the spread of agriculture following this period. Using the Bactrianus sparrow as a proxy for a pre-commensal, ancestral house population, we performed a comparative genome scan to identify genes potentially involved with adaptation to an anthropogenic niche. We identified potential signatures of recent, positive selection in the genome of the commensal house sparrow that are absent in Bactrianus populations. The strongest selected region encompasses two major candidate genes; -which regulates craniofacial and skull development and, part of the amylase gene family which has previously been linked to adaptation to high-starch diets in humans and dogs. Our work examines human-commensalism in an evolutionary framework, identifies genomic regions likely involved in rapid adaptation to this new niche and ties the evolution of this species to the development of modern human civilization.
In a blinded, placebo-controlled study, the reactogenicity, immunogenicity, and clinical efficacy of single doses of US inactivated split-virus and Russian live attenuated, cold-adapted influenza vaccines were compared in 555 schoolchildren in Vologda, Russia. Serial serum samples were collected and school absenteeism was assessed. Systemic reactions were rare, but local reactions (primarily erythema at the injection site) were observed in 27% of the inactivated vaccine group, and coryza (12%) and sore throat (8%) were observed in the attenuated vaccine group. At 4 weeks after vaccination a > or = 4-fold rise in titer of hemagglutination inhibition antibody to A (H1N1), A (H3N2), and B was noted, respectively, among 78%, 88%, and 53% of children who received inactivated vaccine and among 55%, 79%, and 30% of children who received attenuated vaccine. The vaccine efficacy for preventing school absenteeism due to respiratory illness during the period of peak influenza activity was 56% for inactivated vaccine and 47% for attenuated vaccine.
The Sociable Lapwing Vanellus gregarius is a critically endangered species, probably declining from 5000 pairs to 500 pairs in 11 years. Fieldwork was conducted at two sites in Kazakhstan, May–August 2004, to identify causes of the species’ decline. In total, 58 nests and a minimum of 36 broods in 16 colonies were found: colonies consisted of 1–8 nests that were on average 154 m apart, with 2.1 km between colonies. Although classified as biparental, the total proportion of time both parents spent incubating was low (77 ± 2% se, n = 13 nests). Daily survival rates (Mayfield method) were very low during incubation (0.943 ± 0.009 se) but high during the chick stage (0.986 ± 0.004 se); incubation and chick‐stage durations were found to be 28.5 and 29 days, respectively, so that the overall probability of any breeding attempt fledging chicks was 0.124 (0.055–0.274 95% confidence interval). A breeding attempt that produced fledglings, fledged 2.2 ± 0.2 se chicks (n = 26) on average. Observed productivity predicted the population decline over the last 11 years well (using the maximum number of nesting attempts per pair of 1.4 that could have occurred in this study, and assuming an adult and first‐year survival rate of 0.74 and 0.60, respectively, based on the means for Northern Lapwing Vanellus vanellus and Golden Plover Pluvialis apricalia). Nest survival during incubation (controlling for colony effects) may have been longer for nests in predominantly Artemisia rather than grass habitat. Mean nest survival for a colony was higher in areas with more bare ground and more nest predators, suggesting that predators were relatively unimportant in nest (egg or chick) mortality, but was lower in areas with high numbers of cattle, suggesting that trampling was important (64% of known‐cause nest failures, n = 11, were trampled). Nests were preferentially sited in areas of Artemisia, where there was greater dung abundance, and probably shorter vegetation, suggesting that highly grazed vegetation is important for nesting. Chicks preferentially selected areas with a lower percentage of bare ground and possibly taller vegetation, suggesting that more vegetated areas are important for chicks. The results suggest that low egg survival due to nesting in areas of high grazer density may be responsible for the Sociable Lapwing's decline. Although grazers may create suitable vegetation for initial nesting, if those grazers remain at high density as in anthropogenic systems then they may reduce nest survival, probably through trampling. Experimentally maintaining grazing early but reducing it later in the breeding season is the logical first step in managing the species to increase egg survival and so to increase productivity.
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